Item | Value |
---|---|
RNA id | XM_022678041.1 |
length | 10306 |
RNA type | mRNA |
GC content | 0.44 |
exon number | 6 |
gene id | LOC103040707 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_035912.1 |
NCBI id | CM008315.1 |
chromosome length | 41032606 |
location | 13866287 ~ 13882845 (+) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
species | mexican tetra (Astyanax mexicanus) |
id | name | namespace |
---|---|---|
GO:0009259 | ribonucleotide metabolic process | biological_process |
GO:0009260 | ribonucleotide biosynthetic process | biological_process |
GO:0052652 | cyclic purine nucleotide metabolic process | biological_process |
GO:1901293 | nucleoside phosphate biosynthetic process | biological_process |
GO:0046068 | cGMP metabolic process | biological_process |
GO:0050953 | sensory perception of light stimulus | biological_process |
GO:0006163 | purine nucleotide metabolic process | biological_process |
GO:0006164 | purine nucleotide biosynthetic process | biological_process |
GO:0007601 | visual perception | biological_process |
GO:0009117 | nucleotide metabolic process | biological_process |
GO:0006182 | cGMP biosynthetic process | biological_process |
GO:0046390 | ribose phosphate biosynthetic process | biological_process |
GO:0055086 | nucleobase-containing small molecule metabolic process | biological_process |
GO:0019637 | organophosphate metabolic process | biological_process |
GO:0006753 | nucleoside phosphate metabolic process | biological_process |
GO:0009150 | purine ribonucleotide metabolic process | biological_process |
GO:0044281 | small molecule metabolic process | biological_process |
GO:0009152 | purine ribonucleotide biosynthetic process | biological_process |
GO:0090407 | organophosphate biosynthetic process | biological_process |
GO:1901135 | carbohydrate derivative metabolic process | biological_process |
GO:1901137 | carbohydrate derivative biosynthetic process | biological_process |
GO:0072521 | purine-containing compound metabolic process | biological_process |
GO:0072522 | purine-containing compound biosynthetic process | biological_process |
GO:0009165 | nucleotide biosynthetic process | biological_process |
GO:0019693 | ribose phosphate metabolic process | biological_process |
GO:0009187 | cyclic nucleotide metabolic process | biological_process |
GO:0009190 | cyclic nucleotide biosynthetic process | biological_process |
id | description |
---|---|
ko04744 | Phototransduction |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU191316 | lncRNA | upstream | 16305 | 13793016 ~ 13849982 (+) | True | G141324 |
TU191323 | lncRNA | upstream | 35257 | 13826703 ~ 13831030 (+) | True | G141329 |
TU191313 | lncRNA | upstream | 74929 | 13758683 ~ 13791358 (+) | True | G141323 |
TU191295 | lncRNA | upstream | 218215 | 13647861 ~ 13648072 (+) | True | G141311 |
TU191274 | lncRNA | upstream | 277828 | 13588090 ~ 13588459 (+) | True | G141292 |
TU191428 | lncRNA | downstream | 285869 | 14168714 ~ 14170792 (+) | True | G141405 |
TU191429 | lncRNA | downstream | 289381 | 14172226 ~ 14173432 (+) | True | G141406 |
TU191437 | lncRNA | downstream | 299199 | 14182044 ~ 14193703 (+) | False | LOC111194315 |
XR_002651024.1 | lncRNA | downstream | 299616 | 14182461 ~ 14193663 (+) | False | LOC111194315 |
TU191441 | lncRNA | downstream | 302362 | 14185207 ~ 14191053 (+) | True | G141413 |
XM_007260179.2 | mRNA | upstream | 19336 | 13796394 ~ 13846951 (+) | False | rgs20 |
XM_007260180.2 | mRNA | upstream | 19336 | 13796394 ~ 13846951 (+) | False | rgs20 |
XM_007260181.3 | mRNA | upstream | 19336 | 13821624 ~ 13846951 (+) | False | rgs20 |
XM_022678040.1 | mRNA | upstream | 19336 | 13840739 ~ 13846951 (+) | True | rgs20 |
XM_022678039.1 | mRNA | upstream | 429084 | 13393377 ~ 13437203 (+) | True | LOC103030306 |
XM_022678043.1 | mRNA | downstream | 18063 | 13900908 ~ 13918612 (+) | True | gpr141 |
XM_007260184.3 | mRNA | downstream | 20395 | 13903240 ~ 13918612 (+) | False | gpr141 |
XM_007260188.3 | mRNA | downstream | 55440 | 13938285 ~ 14142611 (+) | True | LOC103035806 |
XM_022678044.1 | mRNA | downstream | 333265 | 14216110 ~ 14219347 (+) | True | LOC111194316 |
XM_022678045.1 | mRNA | downstream | 374027 | 14256872 ~ 14269906 (+) | False | LOC103037989 |
TU191361 | other | upstream | 7682 | 13855603 ~ 13858605 (+) | True | G141361 |
TU191033 | other | upstream | 1016345 | 12842814 ~ 12849942 (+) | False | LOC103029537 |
TU191019 | other | upstream | 1122834 | 12741473 ~ 12743453 (+) | True | G141086 |
TU190827 | other | upstream | 1484733 | 12378996 ~ 12381554 (+) | True | G140930 |
TU190829 | other | upstream | 1625662 | 12237988 ~ 12240625 (+) | True | G140931 |
TU191433 | other | downstream | 297820 | 14180665 ~ 14200998 (+) | True | G141410 |
TU191577 | other | downstream | 645295 | 14528140 ~ 14530296 (+) | True | G141495 |
TU191927 | other | downstream | 1171812 | 15054657 ~ 15056973 (+) | True | G141740 |
TU192022 | other | downstream | 1345865 | 15228710 ~ 15285457 (+) | True | G141791 |
TU191950 | other | downstream | 1502771 | 15385616 ~ 15390415 (+) | True | G141754 |