RNA id: XM_022678048.1


Basic Information

Item Value
RNA id XM_022678048.1
length 3719
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC103037989
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14256872 ~ 14269906 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTTTTCCATTATGTGCGCCTTTTTAGTACTATGACTGTTACCCTTTTTAGACTGATCTATTGGGTCAGATAATCAAAACTGATGACCAGATAATTGCCTCAGCATATTTCAAAAGTAGACAtggcttttttttgttgtgaatgaaatgtgtatgtgtttggTCACCCATTTCATCACAAAGGATGCACAAAGTTGGCAGGCCTCTGAGCCTGGGTTTTGTTATGCATGGCATTGGATTTGGTCTGAGATGTAGGTGAGAGAAGGAATAGGAGAGTATTGTAAACTACAATAGTTGTAAAGCGTGCAGATTTTTCTTAACCatgacattttaatatttcatcATCATTGCATGACTATCAGCACTCAAGGCTCTTTTACACCGGGCTGGGCCTCAAATCTGTGATCACACATTTTGTTGTCATTTTCTTTAACAAGGTGATTCGGTTACACTTTGTGCTGGGCTAATCACCTGGGTGGGTACTAGGGCTGCGTGATATTGGGTTGGGGGAACTGTCATTGCAGTATTTTGCTGTGATTTCAAAATACCAGAATTTTCATCAGAAGCCAGCATGTCATATAAATGATGTCATCAGTGTATTACAGATtggagtgaaataaatgataatgagGAGTTGGAAatgtaatggaaaatgagaacccTGTGAACTTTCCTTTTGTAGCAAGCAGGTTGTAGCATGTCGTTAAAACGATaaattgtgcagccctagtgaaTAGGTAGCCTTAGACTCTTCTTTACATAAACCCCAAATGTGGAGTACATGTAGAAAATTGTACCAGGAGACCCTCCATTGTTTCTTTTGTGATTTGTGTATACTATCAACACTAACACTGCATGAAACATCACCACCACCGTCATCTCACAACCTCCCGAGATTCCTGTATATATTCACGGGTGCTGTTGTGTGATGGGAAATGTACAGATACTCGATCAAGCAGGGTACCACACAGATAGTACCATGCTTGTCCACACTATCCGGTGGAAAAGCCCCTTCAGTGTAGCCACATTCCAGAGCTCATCAATACAGATACACTTTAGGTACGCtgagtgtctttgtgtgtgtttgtgtgttgtgttctgGGTATGTTGGAAATCCATGTCTCCTTTGCAAATATGCTGTAAACTATTAGAGAATCCTTGGTCTTGTGTAAAAGAGGGCTATCAGTCAACACAGCAGTCTAATCAGTCTGATAAAACAGTTACAACTTTTGATTTGGTAGCAAAACTGTCCTAAAGTTTGGCATTGAACACACTGTTTATATGAATTACACTTAAGTTGTGTGGTTTGTGCAGGATCGTCCTTCCTCTTACAGAATACCAGTGTAAGTCCAAAAGCCTTCAAGGAAAACACCTCCGGTTTCAGTTCGTATTATAGTGTTTTGTGCTGGTATGGATTTTGTTGAACTATGTTGACAATCTTGTTGGAATCCATGCAGTCATAACTGTACATGTTTTGAAATGTGTGCTGTGCAGGCCTACAGTAAAACCCCTGAGCTTGCTTCATCACTGTCAAAACTGAACCAAAGGGCTTCTCTGCATCTTCTCAGTTAACTCCCTGGCTAATATGCATAAGTTGTGGCAGCACAGAGGCAGCGAGCTCTGGCAATCATGTGTCGAGTCTATGTGGGGTCCATCTATTACGAACTTGGCGAGGACACCATTCGGCAGGCCTTTGCTCCGTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGACTCTGTCACCATGAAGCACAAGGGCTTTGCCTTTGTGGAGTATGAGGTGCCCGAAGCTGCTCAGCTGGCCCTGGAGCAAATGAACTCAGTCATGCTGGGTGGGAGGAACATCAAGGTGGGGCGGCCAGGTAACATCGGACAGGCACAACCCATCATCGACCAATTGGCAGAGGAGGCGCGCGCATACAACCGCATCTATGTAGCCTCAGTGCACCCGGACCTGTCTGATGACGACATCAAGAGCGTCTTCGAGGCCTTTGGGAAGATTAAAAGCTGCATGCTGGCCCGAGAGCCCACCACAGGAAAGCACAAGGGCTACTGCTTTATCGAATATGACAAGCCTCAGTCAGCGGTTGATGCAGTGTCCTCCATGAACCTTTTTGATCTTGGAGGTCAGTACCTGAGGGTTGGGAAGGCTGTGACTCCTCCAATGCCCCTGTTAACCCCCACAACACCTGGAGGTTTGCCTCCTGCTGCAGCTGTTGCGGCTGCAGCTGCCACCGCTAAAATCACAGCTCAGGAGGCATTGGTGACTCCCGCccagctcctcagccagcaAATGGGCCTTCCTCAGGCAGTACTGGCGGCCCAGGCCCCGGGCTTAATTACAGGTGTGACACCTGTTCGACCAACCTTGCCCATGGTTCCTCAGGTAGGCCTGGTAAACCCTGTGCTGGCCTCACCACCGGTCACATCCAGCACATCCACAGGGACACCAACAACCACCACACAACAGCCACCTGCTGAGCCTAAAAAGGAAACTGAAGAGAAGAAGCGGGAGGAGAATGCTGCCTGGGTTGATGGTCTGGGAAAGGAGAGCGCAAATGAACAACAGCCAGTTGGAGGAAGTGGAAGCAAAAATGCAGCCGCACTATCTGGGTCCACAGTAATGGTGTTGCGCAACATGGTGGGACCTGAGGACATCGACGATGACCTGGAGGGGGAAGTGACGGAGGAATGCGGAAAATTTGGCGCTGTGAACCGAGTCATCATCTACCAGGAACGACAGGGGGAAGAGGATGATGCCGAGATCATCGTGAAGATCTTTGTGGAGTTCTCCGACAGTGAAGAAATGAACAAGGCCATTCAGGCCCTTAACAACCGGTGGTTTGCAGGCCGTAAAGTTGTGGCCGAGGTCTACGATCAGCAGCGGTTCAATAATAGTGACCTCTCTGCATAGGACTGTCCCAAAAATGACCACCAGCCCTTTCTTCACCTGCTCAGACTCACTCAGCCTCCATCACTGCTGCTAGAGTTTTGGGCCTCTTTTAAacttgtaattatttttttattgatgtcgataataataatattgggGACAGTCCCTTTGGTGGGATTCGGCTTAGGAAAATGCGCctcatggattttttttttctttgtcatcACCTACTGTGAAagacttgtttattttttatggttAATGTCTGCAGGTTGTTTTCTAATTTGTCCAAATTCAGCTCCCTCACTGCACCCCTGATGCCCTTGTCCAACTACACAAGATacttttccctttctttctgttaggttttttttttttttatgaacagtTTTTACATCACTAATTCTGTTTAGATTCTGAACATTTGTGTTGGAGTCATTGGTTCTGAATTCAATACAATAAATTCTTCAAATATGCCACACATTCTGTTTGTGACTCATGTGCTTGAAATACATTTTGAAGAAATTTGTGATTGATGAAAATGTTGCTAAATATGCTGGAGgcttaaacataaacatttgtCCTCTAGATCAGTTTAAGGATTTGAATTCGCTCTACATCAGccttaattttttaatgatgCAATACAACTAAAGAATTTGTTCACAGGGTTTGTAACCAATAGGAAAGTACTGAACCTAGACGTGggtgtacattttaaaatcacaataGTTTCAAACAATTTTGTTTTATGATTGTGATATGATGCAATATTTGTTTTCCtacatttgaataaataaaaatgagccATGACTGTCCAAATA

Function

GO: NA

KEGG:

id description
K12838 PUF60; poly(U)-binding-splicing factor PUF60

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191513 lncRNA upstream 25212 14222563 ~ 14236652 (+) True G141467
TU191498 lncRNA upstream 47600 14210460 ~ 14214264 (+) True G141459
TU191444 lncRNA upstream 53048 14202989 ~ 14208816 (+) True G141415
TU191438 lncRNA upstream 63217 14192428 ~ 14198647 (+) False LOC111194315
TU191434 lncRNA upstream 68161 14192428 ~ 14193703 (+) True LOC111194315
TU191575 lncRNA downstream 170999 14440905 ~ 14442332 (+) True LOC111194202
XR_002650985.1 lncRNA downstream 171770 14441676 ~ 14442304 (+) False LOC111194202
TU191588 lncRNA downstream 215114 14485020 ~ 14486617 (+) True G141501
TU191590 lncRNA downstream 215114 14485020 ~ 14486617 (+) False G141501
XR_002650986.1 lncRNA downstream 247440 14517346 ~ 14518444 (+) True LOC111194203
XM_022678044.1 mRNA upstream 42517 14216110 ~ 14219347 (+) True LOC111194316
XM_007260188.3 mRNA upstream 119253 13938285 ~ 14142611 (+) True LOC103035806
XM_022678043.1 mRNA upstream 343252 13900908 ~ 13918612 (+) True gpr141
XM_007260184.3 mRNA upstream 343252 13903240 ~ 13918612 (+) False gpr141
XM_022678041.1 mRNA upstream 379019 13866287 ~ 13882845 (+) True LOC103040707
XM_022678058.1 mRNA downstream 2923 14272829 ~ 14408400 (+) True scrib
XM_022678057.1 mRNA downstream 2923 14272829 ~ 14408400 (+) False scrib
XM_022678049.1 mRNA downstream 2923 14272829 ~ 14408400 (+) False scrib
XM_022678062.1 mRNA downstream 2923 14272829 ~ 14408400 (+) False scrib
XM_022678051.1 mRNA downstream 2923 14272829 ~ 14408400 (+) False scrib
TU191433 other upstream 60866 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 403259 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 1411922 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1518411 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 1880310 12378996 ~ 12381554 (+) True G140930
TU191577 other downstream 258234 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 784751 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 958804 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 1115710 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 1143870 15413776 ~ 15413847 (+) True trnae-uuc_20

Expression Profile