RNA id: XM_022678053.1


Basic Information

Item Value
RNA id XM_022678053.1
length 10163
RNA type mRNA
GC content 0.50
exon number 46
gene id scrib
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14272829 ~ 14408400 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagacgaggcGGAGTTGTGGTGGGTTTCAGTAGCAGAGGCGCTCGCTCCTCTTCAGCACTCAGTCACCTGAAGACTCGGTGTGGAAACAATAACACGCTTAGTGGAGGAGCTTCACCGCGGCACGGCGGAGACGGAGCTGAACCCTGAGCCATATGAGTAACGACAACACGGACACGGATTCTGTCCCGGTTTGCTCGCCTCGCCTCGACCTCGTCTCGCACTGCGGGCTGCCTGCGCTGCCCTACGGCTGAGAGCCCGGCGCCGGACCAACCGACCCAACGGACCGGACGGGACCCGGTCGGTCGCTGCGTTCATTAACATTGTTAACGAGACTCGCAGCCGCcgcattttactgtttttcacgAACATATAAACAAGCCAAGTAGCCACGTTTGAGTTTTATGTAGTTTTAGTGTGAGTTTAACCGCTCTTTTATTATTTGGTCTgttcagttagctagctatagcTATCTAAAGCAGGATAAGTTAGTTCAGTGGACGAGCTGAATGGAAACTGGGGGTTGCTaagctagctacgttagctagctagctggaaTGCTAATCGgtcagctagctaacgttagctcaCTGGCGTTGTTTTTAAATGAGCCTCTAAGGCacttagctagcttgctaaccaTGTCTGTACTGAGAAGCTGCAGCACGTAGTAGTTACCGCTAGCTAGCTAGTGAAAACGAATGTGTTAACAAAACATTTGGTTCGTTGGTGACAAAAAGCTGAGAAAATTCGCGTGTATTTCGCGGCATAATCGCTTTAAGTTAGCCAGCCAGCTAACCTAACCTATAGCTAGCATTAACTATCTAACAGTGAGCTAGCTATTCAGCTCTAATGTTTTATGCAGGTAATTTAACCTAGCTTAGCTGTGTCAGcagagctttttattttttagccaGCTAGGTTAACACGCTGCTCTAGTGGTGATTTTCTGCTTGTATTCGGGGAACAAGGCTTTCTGTGCCTAATTCTTTAGATTTTAGTCTGTTcctgaagaagaggaggagagttTAAACTGGACACGTTTCCCTCCTCGCTCGACTGGAGATTGCTTTACTACCACCGCAGCAGCAGGAGTGGTGCCTCTTTTGAGTGTTTCTGGATAATCTAGCTACCTAAAGCTGAAGGATTTACCCGCCCcaccactcctcctcctccattcCCCCGCTCGTCTTCTGCAGCCACCGTCTCTAATGCAGAGGGCCTGACGGTCGCCGGTATCCTCCCCCCCGGCCATGCTGAAGTGTATCCCCCTGTGGCGGTGCAACCGCCACGTCGAGTCGGTGGACAAACGGCACTGCTCGCTGCACTCAGTGCCCGATGAGATCTACCGCTACAGCCGTAGTCTGGAGGAGTTACTGCTCGACGCCAACCAGCTGAGAGAACTTCCCAAGcCTTTCTTCAGGCTGCTAAACCTGCGGAAGCTGGGCCTGAGTGACAATGAGATCCAGAGACTGCCCGCTGAAGTGGCCAACTTCATGCAGCTGGTGGAGTTGGACATCTCCAGAAATGacatTCCTGAAATCCCAGAGAGCATTAAGTTCTGTAAGGCGCTGGAGATTGCAGACTTCAGTGGAAACCCCCTCTCCAGattGCCTGATGGCTTTACGCAGCTTAGAGCACTAGCCCACCTTGCACTCAATGATGTGTCACTACAGTCACTACCAAACGACATAGGAAACTTGGCTAACCTGGTAACTCTGGAGCTGAGGGAGAATCTGCTGAAGTCTTTACCCACCTCTCTATCCTTCCTGGTTAAACTGGAACAGCTAGATTTGGGCAGCAATCAACTGGAAGTATTGcCGGACACATTGGGGGCCTTGCCTAACCTTCGGGAGCTATGGCTGGACAGGAACCAACTCTCTTCGCTACCTCCAgagCTGGGAAATCTGCGACGGCTTGTTTGCCTGGACGTGTCAGAAAACCGGCTCACAGAGTTGCCCTCTGAGATCAGTGGCCTCATTGCCCTCACTGACCTGCTTCTCTCACAGAACCACCTGGATGTTGTGCCTGACAGTATCGGCTCTTTGAAGCAGTTGTCCATTTTCAAAGTGGACCAAAATCGCCTGGTGCATCTCACTGACTCGATTGGCGAGTGTGAGAACCTCACAGAACTTATGCTGACAGAGAATCTTCTACAGTCTCTCCCTCGCTCCCTGGGGAAGCTGAAGAAGTTGACCAATCTGAATGTGGACCGTAACCGTGTGAGCAGTGTTCCAGCAGAGCTGGGTGGCTGTGCCAGTCTGAACGTGCTCTCGCTCAGAGATAACCGCGTGGGCAAGCTACCTGCTGAGCTCGCCAATGCCACTGAGCTGCATGTACTAGATGTGGCAGGAAACAGGCTACAAAACCTGCCCTTCGCACTGGCTAATCTAAACCTAAAGGCCATGTGGCTGGCGGAGAACCAGTCTCAGCCCATGCTGAAGTTCCAGACGGAGGACGACGAGCGCACAGGAGAGAAGGTCCTCACCTGTTATCTGCTGCCCCAACAACCAACACCCAGCTTAGAGAACCTGCTACAGAGCAGTGTGGATGAAAGCTGGCCCACAGACACTAATCTAAACAGAGTGTCAGTCATCCAGTTCCAGGAGGAGGCCAagccggaggaggaggatgaggagtcTGCAGAGAGAAGGCAGGGTCTCCAGAGACGAGCCACCCCTCACCCCAGCGAGCTGAAGGTGATGAAGAATGTGATCGAGGCCAGACGAAACGAGGCCTACACGTCCAAGCCAGATGATGACCTGGACTCTCCAGACAGAGAGgAAAAGCGATTAAGTAATCTTTCCAACCAGAGCCACGACTCCCAAGCCTCCAACAGCACTGCCTCAGCCAACTCTCATGAAGAGAAACGAGCAGTGAACTTTATTGGGGTGGAGCTTAATGACAAACATgagcaagaggaggaggagcttgATGAGATGGAGGTGGAATATATTGAGCCTACTGTGCACTTTGCTGAGGAACCGATCATccgtggtggtgatgatgaagacgaggaggatgatgacgatgatgaggACGGCGCAAACCGGAGCGACGAGGATTCACGGCCTCCTCAGTTCCCAGCCGAGAAACAGCGGCTCATCCGCAAAGACACACCGCACTACAAAAAGCACTTCAAGATCACCAAGCTGCCCAAGCCAGAGACAGTGGCCGCCCTGCTGCAGGGCTTCAGCGCAGACGGCCTGTCTCCCTCTGCCCGCACGCCCGAGGACCAGAGAGATGAAGATGAGGACGAGGAAGAGGACGAGGATGTAGTAACGGTCAACACCCCTCTGCTTCAGAGACTGGAAGCTGCTGAGCTGGAGGACAGCAGGCTGAATCAGGTGAACTCCTCGCCTCAGCCGGTGAAGCATGTCCTCACCATCCTGAGACAGACCGGTGGATTAGGCATCAGCATAGCTGGAGGGAAAGGATCCACTCCTTACAAGGGTGATGATGagGGTATCTTCATCTCCAGGGTGTCGGAAGAAGGCCCAGCAGCACGAGCTGGGGTCAAAGTGGGAGACAAATTACTTGAGGTAAATGGGGTAGATCTGCATGGAGCAGAGCACCACGCAGCAGTAGAGGCGTTGCGGAGCTCTGGAACGGCAGTGACCATGAGTGTGCTTCGTGAGCGGATGGTAGAACCTGAGAACCCAATCACTACTACACCTCTGAGACCAGAGGACGATTACTTCCCTCGGGAAAGAAGATCCAGCGGCCTTCCCTTTCTGCTGGAGACTGGATCCACTTCTGTCAGTGCAGGCCCCTGCCAGCGTCTGGCCACCTGCTTGGTGCGCAATGACAAGGGCTTAGGCTTCAGCATCGCTGGGGGCAAAGGATCCACGCCATATCGGACAGGAGACACGGGGATCTTCATCTCTCGTATTGCTGAGGGAGGTGCTGCTCACAGAGATAACATCCTTCATGTTGGAGACCGGGTCATAACTATCAATGGTGTAGACATGACAGAAGCCAGACATGACCAGGCAGTAGCTCTGCTTACCGGCACCTCCCCCACCATCACCCTGCTGGTCGAGCGGGACCAGGCAAGTGTAGGTGGCTCTTCGCCCCGAACGCGGCCCcactcacctcctcctccaGAGTCCTCTGACTCCCCTGAGCAAGAGGAGGCTGGAGATGAGCCGCTGGGGAACCATCTCAGTTGCCCGATGGAGGATGAGTACCCCATAGAGGAAGTGACACTGGTCAAAACAGGTGGCCCTCTAGGGCTAAGCATTGTGGGTGGCAGTGATCATGCCAGCCATCCATTTGGCGTCAGTGAACCGGGCGTGTTCATTTCGAAGGTCATTTCCAATGGTTTGGCCTGTCAGAGTGGGCTGCGGGTGGGCGATCGGATCCTAGAGGTCAACTCCACTGACCTGCGGCACGCCACACACCAGGAGGCGGTGAAAGCTCTGCTCTCCAACAAGCAGGAAATCCGCATGTTAGTCCGCAGAGACCCTTCACCCCCAGGCATGCAGGAAATTGTGATTTACAAGCAACCAGGAGAGAAGTTGGGCATCAGCATCAGAGGAGGAGCCAGAGGGCATGCAGGCAACCCCTTCGACCCCACAGATGAAGGCATCTTCATCTCCAAGGTAAGCTCCAGTGGAGCTGCTGCGCGAGACGGCCGCCTTAACGTGGGCATGAGAATCCTGGAGGTGGGCAACCACAGTCTCCTGGGCATGACCCATACAGAAGCTGTCAGGGTCTTACGTGCTACTGGAGATACGTTATTCATGCTGGTGTGTGACGGCTTCGACCCAAGAAACGCACCAGGCGTGGAGGCGTCTCCAGGTGTCATCGCTAACCCGTTTGCAGCTGGTATTGTCCGAAAGAATAGCATGGAGAGCATCTCCTCAATAGACAGAGACCTGAGCCCAGAGGAGATAGACATCATGCAGAAGgAAGTTGAGATGGTGAGGGAGACGTCTCAGTGGGAGCGTGAGGAGATGGAGAAAGTGGAGCGAATGCGCTTGGAGCGTGAGGAGGCTACTCGCCTGCTGGAGGAGGAAACTGAGAACTTGAGCACTGCACCTCTGAAACTGGACTACAAGACACTGGCAGCCCTTCCCACAACCAGTCTACAGAAAGTTGCACGGcTCTGCCTTTCCTCTGTTGAATCCTGTCCCATGGAGACTGCTCTTCAGGCCAGGCAGCCTGGCTCTATAGAACACCACGGCTTTGATAAAGCTCATGCTACCCTGTACCATGTAGACGCTCCCGTCCTGCCCTCCCCCAGCCTGGTTACGAGCACAGCAGCACCCACACATCCCCCAGCCATGCAGGACACTGCTCCAGCTCCTGCAACTGCACAGGAGATGCAAGAAGAGGAGTGTCTGGTGgactctcagccaatcagtttcAGTGAAAATCCCTTCCTGATAGCGAATCGCAAAGGCAAAGGCCGCCCTGCTGCGGAGTGCCTGCTTTCAGGGCCACCCACAGGCTATGGCAGAAAGGGGCAGCTTCAGACCTCGTTGTATAACAAGGGTCCATCTGTCGAGGCCCAAAGGATAGACAGTCCTGTCCGAGAGCAACTTTACTCCCCCAGTTCTCCACTGCCATCCCTTCATCCGCCCTCATCCTCAGCCCCTCTGGCCCTGGGCAGGGAGACGAGATTCGCAAGCATTAATTTCACCTCCAATGTGGCTGTCAAGGACAATTCATCAACCAAGCCTGGTGCCATCCAGCCCATCTCCCGGATACGGCCTGCCATGTCTCCAGCCAGTCAGGATGGCCACAGTAGTCCCAACCCTTTCCAGCATGGCCCCTCCCCCATCAACTCCCAGACCACTCCTCGCGCCCCTTCCCCTGACTCTTTCGACGAATTCCCCATCAATATCAAGCAGGCATATAAGGCCTTCGCAGCTGTGCCTCACTCCCTGGCTGTGCTGGAGCCTCCGCAGgATATATATGCTCAGAGGAACAATATCCACCCAATGCAACCATCACCAGagCCTGATCTGAGTAATGAGGTGTTTGTAGAGGAGAGTGAAGATCACGGGTCCCTGACCCCTCGTCCCTCCCAGTCGGCTGACTGGCGTGAGTACAGGAGTCTGGCCGCTGTGCCACGCCTGTCTCGCCCCTCTCTGGAGTTGAAGACTCCCCCGCCATGTGGAAGAGGCAGCCCAGAGCAGCGTTCCTTCAGAGACCGGCAGAAGTACTTTGAGATCGATGTGAAGCAGCAGACCCCCGAAAAGCCTAAACCTCGCGTTTCACTCGTTGGAGAGGATGACCTGAAGAAaatgaaggaggaggaggCAAAGCGATTTGAGCAGAGAACACAGGACTATTTAAtggatgaggatgaggaggacGAAGAGGAAGATTTGGCTAAGCAGATGGCAGCGATGAAGGCCCAAGGCAAGGTTATCCTGGATGGAGTGGAATACAAGGTGGAGCCTGTTGGCAGCCACACTTCTAATTCGCCCAGGCAGTGTGCCACACCTCCCAACTACAGTGCCACGCCTCCTAGCTACTGTGGCAGCTCAGGACCCTCCTCTGTAGATGGTAGAGCTGATTCCCAGCGTAATTCCATGGAGGACAGCTttagactggagcagagacccAACTCAATGACCGgtCTGATTCCTGTCTATCCCGGCGAGTCTGTGGCTCCCATTCGCACAGCCAAAGCCGAGCGCAGGCACCAGGAGAGACTGCGTATGCAGAGCCCGGAGCTTGCGGTGGCTACTGACAAGGAGCTCTCACCTGCGGAGAAACGAGCCCTGGAGGCTGAGAAGAGAGCAAtgtggagagcagccagGCCTTATGGTCTAGAGGAGGACGTTAGACAGTATGAGCAGGACCTGGCCAAGAGGCTGTACCAGTCGCGTGTGAAGGCGTCGTTAGGCAGCTCTGCAAACCCTCCCGCTTcctgctcctcttcctctcagCCCAGAATGAAGTCTTTGGAGCAGGACGCTCTGAAGGCTCAGATGGTCATTGCAAAATCCAAGGAGGGCAGAAAGCGGGGGACCCTGGACCAGTTAGCCGAATCACCCTCTCCTGCTCCCACGCCCTCGCCCACCCCTATGGATGATGTCAGTCCGCGGGTCGTGACGTCTCCGGGTCGACTGTCCCTGTCAGAAAAGAAGTTTGACTACCGACAGTTCGCTGCCATTCCTTCTTCCAAACCCGTATACGACATTCAGTCTCCTGGTGCCACAGACGACTCTCACTTTATAGATGACGCCTCCACTAACCCAGcttCCTATGCAGACGCTGAGATGCCGGTAGCTCCGGTGGCGGCCACCACAGCTCTGGAGGAGATGGCTCTGTACAGCAACAAGCGCAAACTCCGACAAGGTCGACGCAGCCTGGAGACGCCTGTTCCCACATAACCACCTCCACACACacgcgctctcacacacacacacatgcacattcatACATGATTATGAGGGTAGAATACATTAAGTAGCAATGCTAAGAAGTATAAACTAAACTCAAATATAACACCTTCATAGAGATGTGTGAAAACGCCTCCACAGATCAACGTTCAACCACTCTAGCTTCAGCGCCGACCACCACGgccgattaaaaaaaaaaaaaaaaattaaaaaaacactacagcTTCTTGTCTCCTGCACACCAGTCTTGCCTTTGCAGTTGGCATAGATACAGaaaactcctcctcctccacctccctaGTAGTTGATGTTGGGGATGGTAAAGCTCATAGCAGATATTAATGGTTTTATTTTCTCCTTTCCTTCAGTTTGCGTTTTAGAAGCTGAACTATTTTTAAAGGATACTGTTTGgggttctttttttaatacttcAGTTTTAAATCTctgattttaatgtaaaaaaaggttcttaattataaaagaatagaaaagaCAATGTAAATGTTTAGATTTTCTGACTTTCAAGCTGTTTGAAGAGAGAACATTCTGCTACCTTCCCTGCCCCATAAAGCCTAGGATGGTTTAGATTTTAAAccatacataataataataaacagcttATGCgtaatttatttctgtaattataTCCTCTCATTCTCACAGAGGCTTCCTTttattgcagattttatttgaATCATAATTGGGAAAGAAAACAGGCGcagacaacattttaaaaacatatctgtaaaatgaaacaaatgaatgtacctttttgttttgttttttttgtattattatttttacaaattgTAACTTTTGTCTgacattaaacacaaaataattccataaCAGATTTCATTTAAATGTAGCATCATGTTGCTGAAAAACTAAGCAGCTCCCTGATCTGATCTGTTCTGTTATCATCGTTATTAAGACTAATGTCATCTTTCATCTGCATGGTGATTACACTGTTTGACTCTACTCACATTTTGATACCTGGTACCTGGTTAATTTTCCCCATCTACCACAGCTTACCCCTGAAATGTTGTTGATCTTCAGAGCAGCGACGCTGTTAAGGTCAGACGGGTCCTCAGTAGGACTGTTGTATCACGTATGGAATGGTCTGATAAGGATTCGTGGTGATTACACACAAGAATGTCATGTAAAGATGTTTAGGCACGATAGCTGtgtgcttttatgttttttcacaGAAATAATTTGTATGTTCGTATTTGTATTTTCGTggtcctgtttttctttttatgcatGGGCCCAGAGAATTGCGTGTAACTGATGGATAGgagaaggatacatcagctgcggcTCAGCTGTATGTAAATGCAGTTTGGAGTAGTCTTTTATAGGGTTACGACCAAGAAATTCAGACGAGGCTGGGGCATGGCTAATAAAGACTGCTTTAAGGAGGTCATTTTTCATAACTCTGCATTGTCACATTAAGAGTGACTATTCTTATTGACCAATCAGCATCACGTTTTAGTCTGTACTTTCTACAAATGAGCAGGCATAAAAAAGGACCCAGATTTAGGTACCAGGTAGCAAAAAAGCTGACTAGAGTTCACCAGTGTAGTGGAAAAGCACCATAAAATAGTAAGCCGATATTAAACATCAAATTTCAAACTGCTATGGAAGTTATTTTGTTCTTTAAGTGCTGTAATTACTTTAAAACCCTTTACTGGAATTTCCTCACGTCTACTGCTTGGATCATATGCTGGCTCACTATTTCCTGGAACATTCCTGTTGCCAGATTGATGATTAGAAAGAAAAACTCAACAGTAGACACAGGCGCATATGtccaaatatatacaatcaTTGTCAGACCATTATCTTGATCTTTAATGTGCCAGTCTACAGAGAAGGTCCAACATGCCATCTCCATCAACATATGGTACCGTGCTTTCTATTTATGTAACTCTGGGGTTGGGGGAACTCTACTACTACTTTCACTTGGTGTGAATCTCATATCTTCACTcatatcttttttgtttttttcagacagGCATGTGAAGGTAGtagattattttattactagttattatttttttatttttcactctaATCTTTGATTAATTTAAATCTGAAGCCACTGAAATTCTTCTCCTCGTGTGAATAATGTACAAAATGCTGCGAGAAGCAAAAATCCAAGTTGAATCTGAGCCAGTCTGCACCCAGACCAAGTACCTGGGTGGCTTATATAAATCCAGACGTGGTCTAGACTGGGTGCTCCTTGCATGTATATTGGCTTTGTTGCAAATTTTCTTTAAATCCTGCGACAGGAAACAAGAAATAttcatccctctttctctctagaACCCACCATTTACCCGTTCTCAAAACCCATTCGTTCTACTACTTCTTCAGCTGCCATCTGCACACTGTGGTCAGATCAGACGACTGCCATATcagacatgtttttaatttaactgtaCTAATCTTAGCTTTTGGTGTTGCTCTTGCTAACTGAAATTCAGTTTTGGATGATAACACTTTGGGAATGGCTgatcatttattgtatttttttaaagaccgGTAGAAATCATGTTTTCATGTAATTATTGGGATTCACtacatttttgcagcaggacagTTTTTTTGATCTCTCCCTTTTGTTGTTCTTGATTTTGGGCGGGCGGGTGGGCGGGGGGCTTTTTTGCTAAATGGGTGAGGGAGGGGCTGAAGGCTGGGGATAGAGCTCATTCAGGACTGTAACTAGTGAATTTGTACAACCAAAGAAGTCTATTTTGTGGTTCAGGAATAATAAAGTTTACTTTTCATTTAACGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191513 lncRNA upstream 36177 14222563 ~ 14236652 (+) True G141467
TU191498 lncRNA upstream 58565 14210460 ~ 14214264 (+) True G141459
TU191444 lncRNA upstream 64013 14202989 ~ 14208816 (+) True G141415
TU191438 lncRNA upstream 74182 14192428 ~ 14198647 (+) False LOC111194315
TU191434 lncRNA upstream 79126 14192428 ~ 14193703 (+) True LOC111194315
TU191575 lncRNA downstream 32505 14440905 ~ 14442332 (+) True LOC111194202
XR_002650985.1 lncRNA downstream 33276 14441676 ~ 14442304 (+) False LOC111194202
TU191588 lncRNA downstream 76620 14485020 ~ 14486617 (+) True G141501
TU191590 lncRNA downstream 76620 14485020 ~ 14486617 (+) False G141501
XR_002650986.1 lncRNA downstream 108946 14517346 ~ 14518444 (+) True LOC111194203
XM_022678045.1 mRNA upstream 2923 14256872 ~ 14269906 (+) False LOC103037989
XM_022678047.1 mRNA upstream 2923 14256872 ~ 14269906 (+) False LOC103037989
XM_022678046.1 mRNA upstream 2923 14257326 ~ 14269906 (+) False LOC103037989
XM_022678048.1 mRNA upstream 2923 14261864 ~ 14269906 (+) True LOC103037989
XM_022678044.1 mRNA upstream 53482 14216110 ~ 14219347 (+) True LOC111194316
XM_007260196.3 mRNA downstream 43940 14452340 ~ 14458287 (+) True LOC103039154
XM_022678077.1 mRNA downstream 43940 14452340 ~ 14458287 (+) False LOC103039154
XM_007260197.3 mRNA downstream 53590 14461990 ~ 14472520 (+) True LOC103039460
XM_022678078.1 mRNA downstream 53590 14461990 ~ 14472520 (+) False LOC103039460
XM_022677712.1 mRNA downstream 69154 14477554 ~ 14488421 (+) True LOC111194238
TU191433 other upstream 71831 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 414224 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 1422887 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1529376 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 1891275 12378996 ~ 12381554 (+) True G140930
TU191577 other downstream 119740 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 646257 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 820310 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 977216 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 1005376 15413776 ~ 15413847 (+) True trnae-uuc_20

Expression Profile