RNA id: XM_022678160.1


Basic Information

Item Value
RNA id XM_022678160.1
length 2082
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC103047721
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18969886 ~ 18987441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTctgacagtgtttaaaaaagattATCTCAGGAATTCACAGAGATATCAGTATTAGGAGATCAGGGATTGCTAAAGCTCTGTGCTCTGAGTTATTCTGGACTCTGGCTCAGAGAAGAACACTTTCAGCTGAAACCAAAACTTACAGAAGCATGTCTGTCTTGAGCGAAATCAATCCAGACGTGAGGAGAATCAAAATCTCGGAGCATGACATCTTAGACGAACGAGCAGAGCAAATTCGGACAGAGATTAGACAGGGTTTGGTAAAGCGTTATAAAGATGTTATTGATGTCTCTTCTGGAAATCCTCATGGAATGGGATTGAAACCCCTTACCTTTGTTCGTCAGGTCCTGGCCACCTGCTTCTACCCTCCCCTTGTTCACGATGAGAGTTTACCCCTGGACGTGAGACAGAGGGCCCAAAGTCTTCTGGCAGAATGTGATGGCGAGAGCATAGGTTCATATCCTGCTACATATGGAATGAAACACGTGCGAAGCAGTGTATCCACATTCATCACCAGGAGAGATGGTGTTGTGTCCGATCCTGACAACATCATTATCTCGAATGGTTCCCAGCATGCTCTAATACTAATATTGAAGCTGTTGGTTCAGGGCCGGGGTTTACAGCAGACAGGGGTCCTCACCCCCGTGCCCTGCTACCGCAGCTTTAACAAGGGTCTCGTCGCTCAAGGTGCGGTCTCGGTGCCGTACTACCTGTGTGAAGAGCAGGGCTGGACGGTGCAGGTGGAGGAGCTGCGGAGAGCCCTCCAGGCTGCTAGGGGGCACTGTAACCCAATGGTGTTATATATCATCAATCCAGGCAATCCATCAGGTCATGTGCAGAGTAAGGCCTCTATAGAGGAGGTGATTCGCTTTGCTGCAGAAGAGAGGCTCTTCATTATGGCAGATGAGGTGTACCAGGGCTGTGTGTTTGGGAAGGACAGTGAGTTTTATTCGTATAAGAAGGTGTTGTCTGAGATGGGACCTCCGTACTCCACTAACGTGGAGCTGGCCTCCTTCCACTCCGTCTCCAAAGGATTCATGGGAGAGAGTGGTCTACGCTGTGGTTACGTGGAGATGGTGAACCTTGACCCGCAGGTAATGCGTTACGCTTACCAGGCCTTCTCCTTTAACGCCCTGGCGTCCGTGCCCGGACAGATCACCCTGGATGTGATGCTTAACCCTCCACAACCTGGAGATCCTTCATATGCTGTCTATGCTCAAGAGGTCAAGTCAGTTATGAGTGCAATTAAGAATAATGCACAGAGGATTATGGATGTTGTCAGCGGCTTGCCTGGCATGACTTGCCAACCCATAAATGGAGGGATCTTTATGTTCCTGCGCCTGCATTTATCCAAGGCTGCGATTGAACACGCCGAGGAGAAAGATCTAGAACCTGATCTGCTGTATAGCATGAGGCTGCTGGAGGACACAGGCCTGTGTGTGGCACCTGGATGCGAACTCAGACAAAAACAGGGCACCCACCACATCAGGATCTGTCTGGCAACCCCAGAAGAGATAATGGAAGATGTTCTGCACAGGCTGAAGAGTTTCCACCTTCGCTTCATAAAAGAGTTCCCCTAATTAGTGTTTGCCGATCAGATAAAAGGCTGCAATCAGAGATCAGATTTAGGATttttcaatataatatataatttgtcttatataatattcaaaattttctgagatactgatttggGGGTTttcacctatttttttttcGATAACCCACATAACCTGTTCATAAGtactcacacactgctctattaATTCCCAGTATCATTCAGTGTTTAAGCACATGTTATATGATTTCATGTACGTAGGTAGATATCAAAGAAAGTGTTGAAAGAATAAACATCAGTCAATCATACGTTTTCTTTATAGCTTCTTTACATTTGAtacaattaatcaaattattagTTCAATACATTCCAACACAATAAATAAGCAAACGCACTTTAAACATGTCTTATCTTTTTGTGGTAATGATATAAACACCAACTCTACAACTAGGAAGACTTTTATCTTCAAGATAAGATTATCTTCTGCTCTCAGTGCAAAAccaggtattaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192814 lncRNA upstream 12824 18951214 ~ 18957062 (+) True G142397
XR_002650989.1 lncRNA upstream 39398 18923993 ~ 18930488 (+) True LOC103030232
TU192799 lncRNA upstream 74879 18866307 ~ 18895007 (+) True G142385
TU192794 lncRNA upstream 98987 18864191 ~ 18870899 (+) True G142382
TU192792 lncRNA upstream 109145 18860351 ~ 18860741 (+) True G142380
TU192818 lncRNA downstream 3748 18991189 ~ 18994237 (+) True G142401
TU192837 lncRNA downstream 132811 19120252 ~ 19121602 (+) True G142416
TU192839 lncRNA downstream 132811 19120252 ~ 19121602 (+) False G142416
TU192855 lncRNA downstream 183086 19170527 ~ 19170796 (+) True G142432
TU192857 lncRNA downstream 225925 19213366 ~ 19219047 (+) True G142434
XM_022677719.1 mRNA upstream 37741 18930879 ~ 18932145 (+) True LOC111188235
XM_007240018.2 mRNA upstream 143743 18821418 ~ 18826143 (+) True exosc4
XM_007240015.2 mRNA upstream 153489 18794903 ~ 18816397 (+) True LOC103034112
XM_007240016.3 mRNA upstream 153489 18794905 ~ 18816397 (+) False LOC103034112
XM_022678151.1 mRNA upstream 184528 18753807 ~ 18785358 (+) True LOC103034870
XM_022678164.1 mRNA downstream 107325 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA downstream 107325 19094766 ~ 19119530 (+) False LOC103046799
XM_022678166.1 mRNA downstream 438553 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA downstream 441401 19428842 ~ 19431174 (+) False LOC111194335
XM_007240884.3 mRNA downstream 1100855 20088296 ~ 20115213 (+) False ripk1
TU192788 other upstream 76377 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 99569 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 111379 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 1765393 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 1896402 17058294 ~ 17073484 (+) True G142093
TU193111 other downstream 748865 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 1229838 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1795142 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2611241 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 2658464 21645905 ~ 21646705 (+) True G143122

Expression Profile