RNA id: XM_022678165.1


Basic Information

Item Value
RNA id XM_022678165.1
length 2995
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC103046799
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19094766 ~ 19119530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATTCTTGAAGCTATCTCCAGCTGGAAGGGTTGGAGGAGTGTGGAGAGAACGAAGGGCACATTTGTCACTGTAGGACTTGGAGGACTTGCAGGACTTCAGATTTGTTGCTTGAGTTTTTTTTGAGGTACAGTTTCATTCATCTTCTGAGGTATCGttggttatatattttttggttttgttacTGCATTAACTGTATTTTATCACGAAGACAAAGCTGGCTACATTGTGCAGAGAAGCTTGTCTGTCAGTTTTTTTTGCGGACGTTAGACTTGGACTGGCGTTAGACTTGGTCCTGCTTATTGGTTTCACACCGCCACTATGACGACTTTGGAAGCTAGTCATAGTCCTGGAATTGACCTCATTCAGGTCAGGATCGAGGGTCTAAGCAGCAAAATCGACACGCTAATAGACATCCAGGAGAAGGTCCTGAACCGCCTGGACAGCATGTCCCAGGATCTGGACGGAATAGAGCGGGACATGGAGACTCTGAAGCTGGACAAGGAGGAGATCCACTTGCCTCCAAGAGTAACCACTGATGGACCATCTCGAGACAACAGAGGCGAGGTGAAGGAAATGTGCAAAGAAATGAGCAGCATGATGACGGAGGTGAACCAGCGCTCAGAGCAGCAGAACCAGAAGCTCGAGGGCATGGAGAGGCTGGTGCTGAGCATCCAGCAGGTCGTCAGCTTCATTGGGGAAACCGTCAAGACTTCCAAAGTCATGGAACTCATGTTTAAGGGGCCAGCGGCTCGCAAGGGGCTCAAGAACAAGGATAGCAAGGGCAAGCAACCTGCCAAGAGACAGGCCTCTGGGGAAGGTCTACCAGGCAAGCTGAAGGATCATAAGCCAAAGGATGGGAAGGAGAAGTCTCGTCTGAGTCTCAAGGGCTTGAAggcacagaagaagaagaagccccCAGACACtacagACGTCACCTCTCTGAAGAAGCAGGccctgctgctggaggaggttCAGAAACTAAACCGAGAAAATGCTGAGCGATCCACCGTGTCTGTGGAGCTGGAGGTTCTGGAGGAGCCTGTTCAGGACCTCATCCTGGAGGAGCCCAAGGCTCCCATAGCCGAGCAGGAGGAGCTCTCGGAGGAGGAACCGGAGGCCAGAGATGAGCCTaaacaggaggaggaagaagtaAAGGTGGAGAAGGTGGAGAAGGAGGAGAATGAACCTGAGGAGAAAGCTGAAGAGGAGGTGGCAGAAATCACAGAggtgctggaggaggagaaaaaggaggaggagcCTTTCGGCGTTCCTGAGGTGGAGGCTGAGAACACAGTCCAGAGATGTGAATCTGAACAAGTGGACGAGACGACCACCAGCAGCAAGCGGCGAGTAACGGAGGAGGACCTGGAGCTGGAGGACCACAAGAAGAGCAGGGTGGAAGAGGGTGAACAGGAGGAGGAAAGCCCAGTGGAGGTGCCTGAAGATCTGCGGGGTGTTTTTAAAGCGGACGGGGTGGAAATCCACTTAGATTTCAGCAAAatcaagcagcagcagcaggaggacaTACCTGACGACTCGGAGTGTGAACAGTTCTTCATTGACTGCACCCCGCCGCCAGGAGCTCCCTTCAACCACCGCGTGGTTTCAGCCAAACCCAACCAAATCAACAACTTCTACACCATCAACCGGCAGGAAGTCCTGGGAGGAGGCCGTTTTGGTCAGGTTCACAAGTGTATTGAAAATTCCTCTGGACTCACACTGGCAGCAAAGATCATCAAAGCAAGGTCTGAGAAGGAAAAGGAGGTGGTAAAGAATGAAATTCTGGTCATGAACCAACTGGACCATGCCAACCTGATCCAGCTCTACGCAGCTTACGAGTCCCGGAACGACATCATCCTCGTCCTTGAATATGTGGACGGCGGGGAGCTTTTCGACAGGATTATTGATGAGAACTATAAGCTGACTGAACTGGACTCAGTCATGTTCATCAGACAGATCTGTGAGGGTCTGCGCCACATGCACAAGATGTACATCCTTCACCTGGACCTGAAGccaGAGAATATCCTGTGTGTTAGCAGACTGACAAACAAAATCAAGATCATCGACTTTGGGCTCGCAAGGAAGTATCAGCCCAGAGAGAAGTTACGGGTGAATTTCGGCACTCCGGAGTTTCTGGCTCCGGAGGTCATCAACTACGACTTTGTGTCCTTCAACACGGACATGTGGAGTCTGGGAGTGATCGCATACATGCTTTTGAGCGGTCTGTCGCCTTTCCTCGGAGACGACGATAACGAGACCCTGAACAACATCCTGTCCTGCCAGTGGAACTTTGAGGAAGATGAGTTTCTGGGGATTTCAGAGGAGGCCAAGGACTTCATTTCCAAACTGCTCCTCATCAATAAAGGCTGGAGAATAGGGGCTACTGAAGCTCTGAAGCACCCCTGGCTCTCAGACCCAGCAGTCCATCATCGCCTGCGCATGAAGAAGAACATGTGCAGATCGCGGAGAAATTCCTGCGTTCCTCTCCCCGAGAGCTAATGTAAAGGAGCACCCTGGCCAGCTTTAACTACCAGCCGAGGCCATCTGGACCAAGCCTGCTGTGCCTGGACATTACTTGTACACATTTACATACCTGTTAGCTACACTGTCTGGATCAGTAATCGCACAACTTATCGCCTTCCTGGTAACTGCAGTCACTTTGCTTGTTACACCTTGtgcctgcgctgttaaaatagcgtcagagtttaggaataaatctatactgatgggtgtggtggtctgaagtggaagtgaggtgtgttcaggtaaatttctggcgtgtttctatgtTGGtatcagaaaacacaggtgcgccactgactgactaaaaccatgtacacccccacttgttaaacacacaaataaatgtgcTACAAagtgcaaatccagcttttacatcaacaataaacaatataaagcataaaataacactgctggtCTCTTAAATGATCAGCTAGTGTATCTTCTCTGTTAAGATGCACAAAAGCCCCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192818 lncRNA upstream 100529 18991189 ~ 18994237 (+) True G142401
TU192814 lncRNA upstream 137704 18951214 ~ 18957062 (+) True G142397
XR_002650989.1 lncRNA upstream 164278 18923993 ~ 18930488 (+) True LOC103030232
TU192799 lncRNA upstream 199759 18866307 ~ 18895007 (+) True G142385
TU192794 lncRNA upstream 223867 18864191 ~ 18870899 (+) True G142382
TU192837 lncRNA downstream 722 19120252 ~ 19121602 (+) True G142416
TU192839 lncRNA downstream 722 19120252 ~ 19121602 (+) False G142416
TU192855 lncRNA downstream 50997 19170527 ~ 19170796 (+) True G142432
TU192857 lncRNA downstream 93836 19213366 ~ 19219047 (+) True G142434
XR_002651029.1 lncRNA downstream 110639 19230169 ~ 19282116 (+) True LOC111194334
XM_022678160.1 mRNA upstream 107325 18969886 ~ 18987441 (+) True LOC103047721
XM_022678161.1 mRNA upstream 107539 18969886 ~ 18987227 (+) False LOC103047721
XM_022677719.1 mRNA upstream 162621 18930879 ~ 18932145 (+) True LOC111188235
XM_007240018.2 mRNA upstream 268623 18821418 ~ 18826143 (+) True exosc4
XM_007240015.2 mRNA upstream 278369 18794903 ~ 18816397 (+) True LOC103034112
XM_022678166.1 mRNA downstream 306464 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA downstream 309312 19428842 ~ 19431174 (+) False LOC111194335
XM_007240884.3 mRNA downstream 968766 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA downstream 973130 20092660 ~ 20115213 (+) True ripk1
XM_022678173.1 mRNA downstream 1083118 20202648 ~ 20220149 (+) True rnf138
TU192788 other upstream 201257 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 224449 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 236259 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 1890273 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 2021282 17058294 ~ 17073484 (+) True G142093
TU193111 other downstream 616776 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 1097749 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1663053 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2479152 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 2526375 21645905 ~ 21646705 (+) True G143122

Expression Profile