RNA id: XM_022678174.1


Basic Information

Item Value
RNA id XM_022678174.1
length 2392
RNA type mRNA
GC content 0.52
exon number 14
gene id mep1b
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20223776 ~ 20245141 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACTCCATCAGATCAAAGCCAGATTCACTCAGCAGAGCTCCAGCTCCTCACCGTGCTTTCAGCATGAGGAACACGGCTgcagtctctgtgtttattatttatactctATTAACTCTTCTCACCTCTCAAATCAACTGTCTGCCAAAACCCAAAGTGCCCAAGGTCATAGAGTTTGATGTGGATGCTGGAAAAGAGGATCTCTTTGATGTGAATGACGCTGCTGGTCTGGATCTTTTTGAAGGAGATATTGTATTTGagAAAGAAGGACGCAATTCCATAATCGGGGAACAGTACCTGTGGCCAAAGACGGTTCCATACTACTTTGAGGATGATTTGGATATCAATGCCAAAGGTGTTATAATGAAGGCCTTTGAACAGTATCGCCTGAAGACGTGCATTGACTACACACCCTGGAGTGGAGAGCAGAACTATATCTCTGTGTTCAAAGGCAGCGGGTGCTTCTCCTCTGTGGGGAATCGTCATGTTGGGAAGCAGCGGTTGTCCATCGGTGCAGGATGTGACCGAATCGCCACTATTGAGCACGAGTTCCTCCACGCTCTCGGCTTCTGGCACGAGCAGTCCCGCTCTGATAGAGACGATTACGTCACCATCATGTGGGATCGCATCTTAGAAGGCCGAGAGCACAACTTCAACAAATACGACGACACCACCTCCAGCAATCTGAACGTACCCTACGACTATGGTTCCATGATGCACTACAGCAAGAACTCCTTCCGTAACGGCACCGAACCCACCATCGTCACCAAGATTCCCGCTTTCCTGGACGTCATCGGCCAACGCATGGAGTTCAGCGACAGCGACCTGCTGAAGCTCAACAGGCTCTATAAATGCTCACGTTCCTCCACTTTTCTGGACACCTGTGACTTCGAGCAAGAGAATATTTGTGGGATGATCCAAGGTGCCGATGATCAGGCGGACTGGGAACGTGTTGCCAGAGCAGCTGGTGGTCCAGACACTGACTTTTCCAACATGGGGCGCTGTTCTGgTACAGGTTACTTCATGCACTTTATCACCTCCAGCGGCACCCCAGGCCACACAGCTCTGTTGGAAAGCCGACTGCTGTACCCTAACCGAGGCTACCAGTGCCTGCAGTTCTTCTATTACAACAGTGGAGACCCCACTGACCAGCTGGCCATCTGGGTGCGGGAGTACGACGAGGCCAATCCTAATGGTACACTGCGCTTCATCCAGCAAATCAATGgACCTCCCGAGGACCAGTGGCAGCTCCACCACGTCAGTTTGAACGTTTCCAGAAAGTTCCGCGTGGTGTTCGCAGGCACCAAAGGCTCTGAGAGCTCCATTGGAGGGCTTTCCTTGGATGATATCAATTTATCAGAGACCACCTGCCCAGAACATATATGGCGGATCAAAAACTTTAAGGATGTGATTGAAAACACACCGATGGGCACTGCCGTTTACAGCCCACGCTTTAAATCCAGTTACGGCTACAGCTTCCAGATGGGGCTGTACCCCAACGGCACTGAGTCGTCTCCTGGGGAGCTCGGAGCCTACGCCCACCTGACGTCCGGGGACGATGTGGTCGATGCTGGGCTTGTCTGGCCGTGTCCATGGAAACAGATGACCATGATGCTGATGGACCAGCACCCGGACATCCGCAAGCGCATGTCCAACCAGAGGAGCGCCACCACTGAGCCTGAAGCAACAATTGAAGGGTCTGGGATGTTTTTCTGGGATGATCCGAGGAAGGTGGGGGTGGAAGTGACAGAGGAGGGCGGGACTAAGTACTTCCGGGGTCCTGGAGCAGGAACATCTGTATACCTGACCCAGGCCAGAGCTCTCAGCAGAGATTTCATCAAGGGTGGAGATGCCTTCTTCCTTCTCACCATGGAAGATATATCCCACCTGGTGCCTTCACAGCCCCTCCCCCCAACTACAGTCCCGCCTACAAATGAAACTACAACTCCTCCCACAAATATAACTGCCACAACCTCTACAGCCTCTCCTACCACTGGATCTACCACATCTGGATCCACCACATCTGGATCCACCACAACTCCCCAGCCTACCATAACCACATTACCCCCCCATGACCCGTGCTCCACAGTGACGTGTGAAAACGACGGGGTGTGTGTAAAGGAAGGTGCCACACAAGCCGTGTGCAGGTGTGCAGTTGGTGACGACTGGTGGTACTATGGAGTCAAGTGCCAGTTTAAGAGTTCCAGCCAGGAGAACGTGGTGACGGCGGCCGTGGCCTCAGTGGTGGTCTTCGCCGTCATGCTGATCGTGACGGTGGTGAGCGTGGTCTGTCTGAAGAAGAAGTACATGAAGAAGATGGGCGATATGGGTACCGGAATAACCATGCAGAATTTATCAGCAAAACTTCCATcgtaaagctttttttttttttat

Function

GO: NA

KEGG:

id description
K08606 MEP1B; meprin B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193232 lncRNA upstream 83377 20138126 ~ 20140399 (+) True G142726
TU193098 lncRNA upstream 106326 20116757 ~ 20117450 (+) True G142610
TU193150 lncRNA upstream 126542 20043103 ~ 20097234 (+) True G142656
TU193107 lncRNA upstream 494805 19724445 ~ 19728971 (+) True G142619
TU193278 lncRNA downstream 153612 20398753 ~ 20414640 (+) True G142765
TU193282 lncRNA downstream 164482 20409623 ~ 20434382 (+) True G142769
TU193284 lncRNA downstream 178281 20423422 ~ 20499753 (+) True G142771
TU193293 lncRNA downstream 288650 20533791 ~ 20534057 (+) True G142780
TU193309 lncRNA downstream 331568 20576709 ~ 20580373 (+) True G142788
XM_022678173.1 mRNA upstream 3627 20202648 ~ 20220149 (+) True rnf138
XM_007240884.3 mRNA upstream 108563 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA upstream 108563 20092660 ~ 20115213 (+) True ripk1
XM_022678166.1 mRNA upstream 792602 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA upstream 792602 19428842 ~ 19431174 (+) False LOC111194335
XM_022678180.1 mRNA downstream 311625 20556766 ~ 20574038 (+) True LOC111194338
XM_022678179.1 mRNA downstream 366354 20611495 ~ 20667477 (+) True LOC111194337
XM_022678176.1 mRNA downstream 470403 20715544 ~ 20774155 (+) True LOC103044091
XM_022678177.1 mRNA downstream 470403 20715544 ~ 20774155 (+) False LOC103044091
XM_022678181.1 mRNA downstream 558159 20803300 ~ 20812844 (+) True LOC111194340
TU193252 other upstream 3629 20217279 ~ 20220147 (+) False rnf138
TU193111 other upstream 355484 19736306 ~ 19868292 (+) True G142620
TU192788 other upstream 1330267 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 1353459 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 1365269 18856236 ~ 18858507 (+) True G142378
TU193349 other downstream 537442 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 1353541 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 1400764 21645905 ~ 21646705 (+) True G143122
TU193826 other downstream 1625535 21870676 ~ 21874386 (+) True G143182
TU194024 other downstream 2290544 22535685 ~ 22610447 (+) False G143324

Expression Profile