RNA id: XM_022678179.1


Basic Information

Item Value
RNA id XM_022678179.1
length 1339
RNA type mRNA
GC content 0.66
exon number 4
gene id LOC111194337
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20611495 ~ 20667477 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCACGCGTGATCCGGTCTGAGCCGCGCGCAGCTCGCGCGAGTCTCccagtctctctctatctgtctgtctgtaacacacacacacacgcaggcacacacacacacatacacacacacacgcgcgcgcgagGAATCTCCCTGCGTGCATCTCCTTCCGCGCGCTCCCGGAGACGCTCCCCGCAGGACCCCCTGAAGCCCCCGAAGCCCCCCtcgcccccccacccccccagcCCGCCGGGTTTGGATGGCCGTGCCATGGAGGAGGAGGCTCCGTTCCGGAGGGTCAAGACGCGGCGCAAGCGGAGCCGGTGCCCGCGCGGCGTGCCGCTGCCCGCGATCGCGTGCGAGGACGAGTTCGACTGCAAGGAGCTCGAGGCGCTGTTCCGCGGCTACGGCCTGAAGCTAGAGCAGACCGCCACACTCAAAGCGCTCGCGGTGCTCGTGGCGCTGTCCTGCGCGCTCGCGGCGCTCGAGCTGCTCTCCGGCGGGACCGGCGGCGGCGGTAGCAGCGGCGGGAGCTCCGCCACGGTGGCGCGCGCCTCCCACCCGGTGCACGGCGTGGTGTTCGCCTCGCTCTTCGTCGTCACCAACGTGAAGTACCTGCGCGCGGCGCAGCTGCAGCAGATCGCGCACCTCGCGCTGCTCTTCAGCTTTACCTTCTCGCTCCCGTGCTGCCCGTTCCCGCGCCTCGCGCCCGGCAGCGCCGAGCCGCCCCCCGCGCCGGAGCACGGAGTCTGGCAGCTGATGCTCGTTACCTTCGTGGCCTACGCGCTGCTGCCGGTGCGCACGCTGCTCGCCGTGCTGTTCGGGATAGTGGTGGCCGTGTCTCACACCACGGTCACCGCCACCAGCGTCACCGCCCGCACCCACAAACTCTGGAGAACCATGGTGGCCAACACAGTTCTCTTCACCAGCGTGAACCTGTCGGGTCTGTTTGTGAGGATTCTGACTgagcgcgctcagaggaaagcttTTCTCCAGGCGAGGAACTGCATCGAGGAGCGGCTGCGCATGGAGGACGAGAACGAGAAACAGGAGCGGCTGCTGATGAGTCTCCTGCCCAGGAACGTGGCGATGGAGATGAAGGAAGACTTCCTGAAGCCTCCTGAGAGGATCTTCCACAAGATTTACATCCAGCGGCACGACAACGTCAGcaTCCTGTTTGCGGATATCGTGGGATTCACCAGTCTGGCGTCGCAGTGCACGGCGCAGGAGTTGGTGAAGCTGCTGAACGAACTCTTCGGAAAGTTCGACGAGCTGGCCACGGTGAGTCATTCCCGCTCACACCTCGCTCTGATTGGCCGGCTGCTGTTACCACAGTAACTTAACACCTCCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651030.1 lncRNA upstream 7139 20599666 ~ 20604356 (+) True LOC111194339
TU193309 lncRNA upstream 31122 20576709 ~ 20580373 (+) True G142788
TU193293 lncRNA upstream 77438 20533791 ~ 20534057 (+) True G142780
TU193284 lncRNA upstream 111742 20423422 ~ 20499753 (+) True G142771
TU193282 lncRNA upstream 177113 20409623 ~ 20434382 (+) True G142769
TU193342 lncRNA downstream 34209 20701686 ~ 20708499 (+) True G142814
TU193353 lncRNA downstream 131763 20799240 ~ 20799576 (+) True G142823
TU193355 lncRNA downstream 139284 20806761 ~ 20807209 (+) True G142825
TU193356 lncRNA downstream 139284 20806761 ~ 20807209 (+) False G142825
TU193364 lncRNA downstream 173452 20840929 ~ 20841214 (+) True G142833
XM_022678180.1 mRNA upstream 37457 20556766 ~ 20574038 (+) True LOC111194338
XM_022678174.1 mRNA upstream 366354 20223776 ~ 20245141 (+) True mep1b
XM_022678173.1 mRNA upstream 391346 20202648 ~ 20220149 (+) True rnf138
XM_007240884.3 mRNA upstream 496282 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA upstream 496282 20092660 ~ 20115213 (+) True ripk1
XM_022678176.1 mRNA downstream 48067 20715544 ~ 20774155 (+) True LOC103044091
XM_022678177.1 mRNA downstream 48067 20715544 ~ 20774155 (+) False LOC103044091
XM_022678181.1 mRNA downstream 135823 20803300 ~ 20812844 (+) True LOC111194340
XM_015608630.2 mRNA downstream 221486 20888963 ~ 21005781 (+) False LOC103041877
XM_007231054.3 mRNA downstream 221491 20888968 ~ 21008006 (+) True LOC103041877
TU193252 other upstream 391348 20217279 ~ 20220147 (+) False rnf138
TU193111 other upstream 743203 19736306 ~ 19868292 (+) True G142620
TU192788 other upstream 1717986 18856236 ~ 18893509 (+) False G142378
TU193349 other downstream 115106 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 931205 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 978428 21645905 ~ 21646705 (+) True G143122
TU193826 other downstream 1203199 21870676 ~ 21874386 (+) True G143182
TU194024 other downstream 1868208 22535685 ~ 22610447 (+) False G143324

Expression Profile