RNA id: XM_022678180.1


Basic Information

Item Value
RNA id XM_022678180.1
length 1435
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC111194338
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20556766 ~ 20574038 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtggaggGGGAGCGGTGAGGTTAGTtaactccagcagcagcagaagaagcacTAAAGCCCCGTGTTTACTGTCTGTCTGAGTCTATAAACCCAGCTTTAACTCCTCACACACGTCTGGTCCAGCAGCAGGAAGCAGAGATGATCATTCGGCAGCTGGTGAGGAGGACCCCCCTCCCTGCTTTAGAATGTGGGACTCAGATTGCGCTGCTGAAAACTATGACTGGAGTAGCGAGACCAAACTCGGACATGGCAGAGTTTCGTGAGGTTTTCTCCAAAGCCAAACACATCGCCATCATCACTGGAGCTGGAGTAAGTGCAGAGAGCGGCCTGCCCACCTTCAGAGCAGCCAGTGGCCACTGGAGGAAGTGGAAGAcccagGATCTGGCAACCGCACAGGCTTTCTCCCGCAACCCGTCCAGAGTTTGGGAGTTCTACCACTACTGGAGGGAGCTGGCTCTGAAAGCCACGCCCAGCGAGGCCCACAGAGCGATAGCCGAGTGTGAGGCGAGGCTCAGTAAGCAGGGCCGGTCCGTGGTGGTCATCACTCAGAACGTGGACGAGCTGCACCGCAGAGCCGGGTCCAAACATGTGCTGGAGGTCCACGGCAGTCTGTTCAGGACCAGGTGTCTGAGCTGTGGAGATGTAGACGCCAGCCACCACAGCCCCATCTGTCCTGCTCTAGAGGGCAAAGGTGATCCAGACCCAAACTGCCGTGATGCTGCTATTCCTGTGAAGAATTTACCACGgtgtgatgaggGGGGATGTGATGGGCTTTTGAGGCCACATGTGATCTGGTTTGGGGAAACGCTGGACTCTCATATCCTCACCAAAGTGGAGAAAGAACTGGATGCCTGTGATCTTTGCCTGCTGGTTGGTACGGCGTCCGTCGTCTTTCCTGCAGCCATGTTTGCCCCTCAGGTTGCGTCCCGGGGCGTTCCAGTGGCCGAGTTTAACATTCGCCCGAGAGCGAACATGTCTCGATTCACGTATCATTTTCAGGGTCCCTGTGCGACCACCCTGCCCGTCGCTCTGGAGCGCCACGAGTCCGAGGTGATCTGAACCAAGCCCCGCTTTTCCACAgtggaaagagaggaagaggagaatcttcatcttcctctttataaaCCAGCCCTGAGGGAGAGCCCTGCTCAattaccagcatttacacacagcGCACAGAAGCACTCAGCGCCGGGAGCGCGGCGGAGCCCAGAGATCCGTGTCTCTGTTATCAGTACTTTCTGCTTTAAATGAGGTTTGTGGAGGATTAAAAGAGGTGGAGTGGACCTGTTATAGGGGTGTTGTTTCAGCCACGTGGGAACCATTTAATGCTCACTAGGAAATTGGGAGAAGTGTGCTGAATCTCATTTTATTAGCGGTGTAATATAATTGATCATGTTGTGCAGTAAAGCCAAAGCGTTCCCTGGAGACCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193293 lncRNA upstream 22709 20533791 ~ 20534057 (+) True G142780
TU193284 lncRNA upstream 57013 20423422 ~ 20499753 (+) True G142771
TU193282 lncRNA upstream 122384 20409623 ~ 20434382 (+) True G142769
TU193278 lncRNA upstream 142126 20398753 ~ 20414640 (+) True G142765
TU193232 lncRNA upstream 416367 20138126 ~ 20140399 (+) True G142726
TU193309 lncRNA downstream 2671 20576709 ~ 20580373 (+) True G142788
XR_002651030.1 lncRNA downstream 25628 20599666 ~ 20604356 (+) True LOC111194339
TU193319 lncRNA downstream 84863 20658901 ~ 20663865 (+) True G142796
TU193342 lncRNA downstream 127648 20701686 ~ 20708499 (+) True G142814
TU193353 lncRNA downstream 225202 20799240 ~ 20799576 (+) True G142823
XM_022678174.1 mRNA upstream 311625 20223776 ~ 20245141 (+) True mep1b
XM_022678173.1 mRNA upstream 336617 20202648 ~ 20220149 (+) True rnf138
XM_007240884.3 mRNA upstream 441553 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA upstream 441553 20092660 ~ 20115213 (+) True ripk1
XM_022678166.1 mRNA upstream 1125592 19425994 ~ 19431174 (+) True LOC111194335
XM_022678179.1 mRNA downstream 37457 20611495 ~ 20667477 (+) True LOC111194337
XM_022678176.1 mRNA downstream 141506 20715544 ~ 20774155 (+) True LOC103044091
XM_022678177.1 mRNA downstream 141506 20715544 ~ 20774155 (+) False LOC103044091
XM_022678181.1 mRNA downstream 229262 20803300 ~ 20812844 (+) True LOC111194340
XM_015608630.2 mRNA downstream 314925 20888963 ~ 21005781 (+) False LOC103041877
TU193252 other upstream 336619 20217279 ~ 20220147 (+) False rnf138
TU193111 other upstream 688474 19736306 ~ 19868292 (+) True G142620
TU192788 other upstream 1663257 18856236 ~ 18893509 (+) False G142378
TU193349 other downstream 208545 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 1024644 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 1071867 21645905 ~ 21646705 (+) True G143122
TU193826 other downstream 1296638 21870676 ~ 21874386 (+) True G143182
TU194024 other downstream 1961647 22535685 ~ 22610447 (+) False G143324

Expression Profile