RNA id: XM_022678210.1


Basic Information

Item Value
RNA id XM_022678210.1
length 4147
RNA type mRNA
GC content 0.48
exon number 21
gene id LOC103024399
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23572803 ~ 23664047 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCAGAGGTCAGTGTAGAGCGCGCGCGCACGCGATGTTGACAAGTGACATGGCTTTGCTGTTCGCTGCTGCTCCGATCAGTCCGGGTTTATTAACGGCTCCGCGCTGAACCGCAGCGtctctccacctcctcctcctgcacacctcctcctctccacctccttctgcacctcctcctcctcctgctctctcAGGAGAGCCGGGCTGATGAGCGCTGGGGGCTGGTGGTGTGTGCTCTCTGGCTGGTGATATGGAGGCTCTTCCTCCGGACAGCGGGAGGATGGAGGCTTGGCTCGACGACCATGTGGACTTCGCTCACTCGTACTTCGTGCGGAAAGCGAGCCGgGAAATGGTCAACGCCTGGTTTGCTGAGCGAGTCCACTCCATCCAGCCCTCCAGAGAGGGGTCCAAAGCCCTTCCAGAACCCCTCAACTCCCTCCCCACCTCAGGCCCCACTGAAGCTCCTTCACCCAGTCCGGCTCCGTCCACCCCCACCCGCAAAATCTCTGCCTCGGAGTTCGACCGGCCTTTGCGGCCCATCGTGGTGAAAGACGCGGAGGGCTCCCTCACCTTCCTCAGCGACACAGAGAGGGTGCAGATGCCACCTCCGACCTCCCAGAAGCTCAGCTCAGGAGAGGGTCCGGACGAGGGTGGAGGTAGAGGGGGGGACCGCTGCGCCCGTCTGCTGGAGCTCGTTCGGGACGTCTCGAGCCACTTGGACCTGACAGCCCTCTGTCACAGGATCTTTTTACACACTCACGAGCTCATCGCAGCAGACCGCTACTCCTTATTTCTGGTGTGTGAGGACAGCTCCAACAAAAAGTTCCTGGTCAGCCGACTCTTTGACGTCGCCGAGGGCTCCACTCTCGAGGAGGCCTCAAACAGCGGCATCCGCCTGGAGTGGAACAAAGGTATAGTCGGCCATGTGGCGGCTACAGGCCAACCCCTCAACATCAAGAACGCGTACGAGGATCCCCGATTCAATGCAGAGGTGGACCAGATCACAGGGTACAAGACTCAGAGCATCCTGTGTATGCCCATAAAAAACCACAGAGAGGAGGTCGTTGGTGTGGCACAAGCAATCAATAAGAGGTGCGGAGAGAACAGCACCTTCACAGAACAAGATGAGAAGGACTTTGCCTCCTACTTGGCTTTCTCTGGTATTGTTCTACACAATGCACAACTTTATGAGACATCACAGCTTGAAAACAGGCGGAATCAGGTGTTGCTGGATCTGGCCAGTCTTATTTTTGAAGAACAGCAGTCGTTGGAAGTCCTGCTGAGGAAGATTGCTGCCACCATCTTGTCTTTCATGCAGGCTCAAGAATGCACTGTATTCACTGTTGATGGTGAAACGTCGAACGCTTTCTCCAGCGTGTTCCACATGGAGTACGAGGAGCTCGCAGGGTCCATGGAGTTCCCGAACAGGGACGGTGATGTGAGCAAGATTAACTACATGTATGCCCAGTACGTGAAGAACACCATGGAGCCGCTCAACATTCCTGATGTCACTAAAGACCAGCGATTTCCCTGGACTAGTGAGAATCCAGACTCGCCAAACTACCATGTGAAGAGCTTGTTATGCACACCAATCAGGAATGGCAAAAAGGACAAAGTTATCGGTGTCTGCCAGTTGGTCAACAAAATGGACGAAGCCACAGGTCAGGTAAAGGCCTTTAACCGGAATGATGAGCAGTTTCTAGAGGCCTTCGCAATCTTTTGTGGGCTGGGCATCCAGAACACGCAGATGTATGAGACGGTGGAGAGGGCCATGGCCAAGCAGGAAGTCACACTTGAGGTTCTTTCTTATCATGCCTCCGCTGCGGAGGAGGAGACACGGGCGCTCCAGGCAGCCACTGTTCCCTCAGCTCAGTCTCTGAGACTGATGGACTTCAGCTTCAGTGACTTTGACCTCTCAGATGCTGAGACCACCCAGGCTGCCATCCGCATGTTTGTGGACCTCAAGCTTGTGCAGAACTTCCAGATGAAGTACAAGAGCCTGTGTCAGTGGATATTAAGCGTGAAGAAGAACTACAGGAAGAACGTGGCCTATCATAACTGGCGGCATGCCTTCAACACTGCGCAGTGCATGTTCGCCATACTCAGATCTGGCAGATTACAGAATAACATGAGTGACTTGGAGATTTTGGCCCTGATGATTGCAACACTGAGTCACGATTTGGACCACAGAGGTGTCAACAACTCATTCATCAAGAGGAGTGACCATCCTCTGGCCCAGCTCTACTGCCACTCCATTATGGAGCATCACCACTTCGACCAGTGCCTCATGATTCTCAACAGTCCTGGCAGTCAAATTCTAAGCAGCCTTTCTCTGGAGGAGTACAAAACCACGCTGAAGATGATCGAGAAGGCTATCTTGGCCACTGACCTGGCCGTCTACATGAAGAGGAGAACAGAGTTCTTTGAACTCACAAAGAACAGTCAGTTTGTCTGGGAGGATGAATGCCACAGAGACTTGCTGAAGTCTATGCTGATGACGGCATGTGATATCTCTGCTATTACGAAGCCCTGGCCTGTACAAAAGAGgATTGCAGAGCTTGTCGCCACAGAATTCTTTGAGCAAGGGGACAAAGAACGAAGAGAGCTGAACATTGAACCCATTGATCTGATGAACAGAGAAAAGCGTGATAAGATTCCCAGCATGCAGGTGTCTTTCATAGATGCTATTTGCACACAGTTGTATGAGACACTGGCCAGTATATCAGACTCCTGCTCCCCCCTGCTGGAGGGCTGTAGGAAGAACAGGCAGAATTGGAAACTCTTATCTGAGCACGGCGAGGAGGCAGGCTTACTGAACGGAGGACTTTAAACCCATAATTCATGACCAACACGGATCAGCCTATCTGCAACTGCAAGACAAACTCCTTCCTTCACTAATGAAGCTTAGCTGTGAAGGTTTAAGCAACTGATAATTCAGTCATGATTTCTGCTACACAGCGAGTTTGCACTAGTGATGCACCAAAATCATTTTTTGGGGGCCAAAgctaaaaccaaacaaaaggaaacaaagatttcattttttttggttatttacCTACAGTTTGCTTTTCAggaaagctgaaaaaaaaatcctaaaataattttgtcaTTGTGACCTAAAatcagctaaaaaaaatgaaaaaagtcatTATTCTGTATAAAGATTTCGGACGTTTCGATTATtccactgaaaaaaacaagttcagtttgtttttctgttttttgccattttcggttgccaaatatgGTGCATCCCTAGTTAGCATTTAATGCAGTTTTGACTTGAGAATCAGTACAATCCTGCTGGTTACAACTCGCTCTGACGGAAGGAGGACTGCAGCACTGAAGCAATGTGTTCCACTCTATACAAATCAAAAGTTtggctgtgtctgtgtggttgtaatctatttaaatcaataacACAACCTCTCGTAGATTCTAAAAGTGAGGGCTGATTTACGCTGAACGCTATTGGCCTTGAGAATCAATTGTTTCCGCTTGTCTAGTCACTGAAAACTCTCTAAGAAGGCTCTACAGAAGGGAGACAGGCTCATGTTTCAAATtaaacagcaaataaaacaCAAGAACTGCTTCCTCTAAACAGCATAAATCGGCATAACTCTGAAAGACACATACACGTGTACTCGAGCGCAGGGTAGCTATCACTTGCTTTGACCTTTCCAGGTGATATAAATCACTGCGTACAGTGCGAGACCTGATGAAAGAGAGCAAGtgaagaacagaaagaaagattCCAGACTCTACTTAGCCTCTATGTGTGAGGGCGTTGATACAGAGctctatttattgttttaggCCCGTCTTGGGCTTTATCTGTAGGTCACTCACTGAAACGACGAAACAGAGAAGTAGATGCACAAAAGAACATAACTTATTTCTCACTAAAGTGCACCATAGAGCTAAGCTAACATAGGCAACTGCAACCGTACACGTCCACTTCAGATATACAGAGGAATGTTTTCGATTTTTGTCACTTTGTGTTACGATTTTCACATgtcttttgtatatttattaactttatatCAAGTCTTGTTTTATGTGGTGAGATTTTTGGTTTCTTATGTCTACATGAAAAACTCTTGCATAAAACTGTTgaagggaaaaatatatatttaattattcacGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651000.1 lncRNA upstream 54706 23549322 ~ 23550553 (+) True LOC111194249
XR_002650991.1 lncRNA upstream 76895 23526023 ~ 23528364 (+) True LOC111194209
XR_002650990.1 lncRNA upstream 79324 23523972 ~ 23525935 (+) True LOC111194207
XR_453571.2 lncRNA upstream 84755 23518321 ~ 23520504 (+) True LOC103022725
XR_002650976.1 lncRNA upstream 147953 23455773 ~ 23457306 (+) True LOC111194184
TU194621 lncRNA downstream 6809 23670856 ~ 23671871 (+) True G143793
TU194676 lncRNA downstream 128892 23792939 ~ 23793178 (+) True G143841
TU194707 lncRNA downstream 298134 23962181 ~ 24020510 (+) True G143867
TU194766 lncRNA downstream 381218 24045265 ~ 24046442 (+) True G143919
TU194778 lncRNA downstream 402899 24066946 ~ 24071896 (+) True G143928
XM_022677648.1 mRNA upstream 163169 23435594 ~ 23442090 (+) True LOC103023765
XM_022677727.1 mRNA upstream 210148 23394210 ~ 23395111 (+) True LOC111194251
XM_007238909.3 mRNA upstream 314634 23255677 ~ 23290625 (+) True emilin2
XM_022677622.1 mRNA upstream 354513 23190464 ~ 23250746 (+) True smchd1
XM_022678214.1 mRNA downstream 46461 23710508 ~ 23734928 (+) True LOC103024717
XM_022678215.1 mRNA downstream 116205 23780252 ~ 23904024 (+) False LOC103035300
XM_007238723.3 mRNA downstream 149190 23813237 ~ 23905504 (+) False LOC103035300
XM_007238724.3 mRNA downstream 171584 23835631 ~ 23905504 (+) False LOC103035300
XM_007238721.3 mRNA downstream 184060 23848107 ~ 23905504 (+) True LOC103035300
LOC111194174 other upstream 198365 23403688 ~ 23406894 (+) True LOC111194174
TU194568 other upstream 210019 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other upstream 210019 23385168 ~ 23395240 (+) False LOC111194251
TU194570 other upstream 210019 23394286 ~ 23395240 (+) False LOC111194251
XR_002650977.1 other upstream 211092 23384782 ~ 23394167 (+) True LOC111194185
TU194671 other downstream 163901 23827948 ~ 23916082 (+) True G143836
TU194884 other downstream 1043036 24707083 ~ 24711533 (+) True G144017
TU194997 other downstream 1192959 24857006 ~ 24871749 (+) False LOC111188189
XR_002651001.1 other downstream 1228945 24892992 ~ 24894553 (+) True LOC111194253
TU195051 other downstream 1334726 24998773 ~ 25004171 (+) True G144146

Expression Profile