RNA id: XM_022678217.1


Basic Information

Item Value
RNA id XM_022678217.1
length 4419
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC103039837
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24105335 ~ 24140202 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAATTTCCCCATGTCAGGGAGGCAAATAAAAAGCCATAAAAGGCTGTAAGAGCTAAACAAATAAAGCTGAAGGGAATGGAAGTGGGTGATAAATGAAGGTAATGTACGGTAATGTAATcaccgctgctgctgctcttttGAATCACTCCgtctgtgttttgtgttctaATCCAccttctttatttttgtttacagacTCGCAGCAGTCAGGAAGTCCCAGTAACAATGAGCCTGGCAAGAACCCTCCAGTTTACCTGGAGGACAGCTTTGTGAAATCAGGAGTCTTCAGTGTTTCAGAGTTGGTGAGAGTTTCCAGAActCCTATCACGCAGGGGACAGGGGTGAATTTCACAATGGCAGACATGCCCAGTCAGCCATACTACCATGACCTGAACTCAGTGAGCTTACACCGCTCACTCCCCTCTCCTCACGGCAGTAAACGAGCCAAGACGATTCCAGAGGACAGTATGGAGACCAGTCCTACTGGCCCAGACTTCTACTCCTCCCCCAGCTCACCGGTTAGCCGGCCCTGGCATGAGAGAGACCAagCTGAGATGTCCTCTCCCACCATGAAGAAGGCAGAGAAGCCTCTGTTCAGCCCGACGTCCCCTCAGGACTCCTCACCCCGCCTCAGCTCCTTCCCCCAGCATCATCACCTGACCAGTGTTGGCCACAGTGTGATTTCCACAAGAAGTCCTCCCCCTCACTCTCCGCTGCAGTTCTCAGCTCCTGCCATCCTCCCCCCAGCTCCGTCATCCTACTTCTCCCATCCCACTATCCGCTACCCACCCCACCTCAACCCTCCTGACTCCCTCAAGAACTACGTGCAGCCTTATGACCCGTCCAGCCCCCAGAGTAGCCAGCCAAACAGCAGTGGTCAGGTGGTGGGGAAGGTTCCAGGCCACTTCACACCAGTGCTGACCCCGTCTCCCCACCATGGCACAGTCAGAccggtctctctctctatgcctGACACCAAGCCAATCACCACATCCTCAGAGGGTTATTCGGCTCCTGGCACCCCTACCGCTAACCGTTTTGTGGGACTGAGCCCTAGAGACCCTGCCTTCCTCCACCAGCAACAGCTGAGGATTTGTGACTGGCCCGTGAATCAAAACGTCAGGTCTTATGGCTCAGAGGAGGCTTTGGGGATTTCTTGGCAAAGTGGTACCTGGGCGAGCTTAATTCCATTCCAAGTGTCGAACGGGACTCAGATTCTGCCAACAAATGTCCAGAATTACAGCATAAACATCATTGGTGAGCCCCTTCTCCAGGCAGAGACAAGCAACTGACCAAGCCGGGCCGAGCCTAGACTCTGGAGTGACAGGTCCGTGGACAAACCAGCAAGCAGCACTTATACAATCGCCATTGACTTTTGTCCCTCCCACTGAAGGACTTTGACCTAGAACAGAAGAGTGGGCTGGGTCAAAGCTGGCACGAGCCTCTCCATGCCAGTCAGTCATTGTGTGAGGAGGCCCCTCAACTGACATACTGTGAtatttaccataaaaaaaaattagatgcCTTAATGTTTTTGCATGACACGCTAGTCTCTTGTAGTGTTTTCTCTCATTCTTACGTCACAATTTCTAGTCTTGATTTATGAGCAGGTGTAGAAAGAGAGGCACACAAGGGCTGGCTGGCTGGACGTTTTGGGAAAACAGGCTCCAATTCTGACAAACGCATCAAACTAAGCTCAGACGTTTCATAACATAATCATAGGAACGATTTTTAGCAATTCTGATCtttctgttgttattttttatttttttaccctctaaatttatcattttctgtgaTTGAAAGTCACCTTCTGGTATCTGTAATCTTGTCAATCTTAGATTTGTATTTCCTTTAAAGGTAAATATTACCTTAACTTTTTTCAGTGAAAGAAAAAGACCTGTATTAATAGGTTAGAAAAACAACCCCATTCATTTTTTGACATATTCTAGAAAggattttcagaaaatgaaaaaaagaaaatatctcaTATGAGGCAAGtgcaatttaaatgatttttttactgAAGGGAAGCTATCATAGTCTGTCTGCCCTAGGACTCTAAAGGAAAGGGGAGTAAAAGTTTTTACTAAACTTTTAAATCatgaaatacaatttaaaattgCATCCTCGAATATGAAAATGGGGGATAGTTGAGGGTGGAAAGGCGTGATTGACAGTGAACGTTTACCTGAGCAGAACTGAACATGAACAAAACAGCACTTATCTTGAGCCGTACCCAGCACTCGGGTAgctattgtttaatttattttgtgaaaTGGCAAACAGAAACTTAAAAAGGTGAAAAGACACAGATATACCGCGTGTATAAAATGGCTTATTTTGATGTAGTACCCACCAATTTAGTGTGCATTTTCATTTGGGCCATTAGCTTATAAAGCTACTGTTTACAATGTGATATTACAAGAAACATGAGGAACGCAGGCTGGTGAAGTAATTTAAGAGTAAATGTGTGTGCttgcgtgcgtgtgtgcgtgcgtgtgtgtgtgtgttatgttgtAAAATCTGCACTCAGTTAAACACTAACCTGCAGGGTGAGGCTAGGTCTCATGGTGCTTCTTTTATGCCCAGTTTGGTGGATCCCAAGAGTTGCAGTCCCATCAATCCGCAATTGTTCACGGCAGTCCCAATGCCATCGCCTCTCCAatcagatatatttatataactaaTCTTTCCAATAATGTTAATTTGCACGAAGATATATAGTCCACATTACGTGCCTTGCCTTTGAATATAGACATCACTACACTTGTTTTTGCTGCATTTATTAccgttttagaaaaaaaataacatttttatgatAAGAAATATTTTGTACTCTGGATGAAATTGTGACATTGTTGATTTTTAGCTCCATTTACTACTTTATCTCACATTTACAGTGCATATCAAGGCTGTGTATAGTTGCCGTTCTAAAGTTTATAATCAACCAGcattatttttcagtattttggtgttgttttattttttgtttttcatcttCCAGTCATTATTGGGGAGGGAGGGGTCCAGAATTATACAAATTATGCAATACCAAGTTTTGCCTATGTAGGTAGTGCTTTTAGCTATGTCGATTATTAGAAGCTAGTAAGGAGATACAGAtagtgtaaacatttattttgttgatgTTGTCATGGTTAATGTCGTTGTCATTGttgatgttgttgttgttgttgttgttattttcttttttttattgaccaAAGTGGGAACTGCTGTCTATGCAGTGTATGACAAGgtcgtttctttttttcttcctttttttcccttttttttcttttgagtgtACTGAAAGATGGAAAGGTGCTTGTAAGGGTTGTTTTGTTTCGTATTCTCTGTGAGgggattaattatttttctacaCTTTGTAGCATGTCTGCAAAGAATGCACCATTTGGTCTAATACGGCTGCAAAGTCACTGATCTGTCTACTGTGACTAACCAACACTTTCTTTAATCTTCACACCTGGGGTGCTAGCCTGACTCCTGGAAGAAGCTCATTTTCACAGAAGAGAAAGCTTGGCTTGAGAATGACAATCAGCTATGAAATCCGGAGCATCACTTAGATCAATCAGATTTATCTGCAGATTGACCTTTATGCAATGAGGACATTAAGTTTTATTCATGCACTACACATGGTTACCTGTTAATTCTTTCATCAGACACTGATCTGACATCATTTAACATAATGCACaacatctatctatcatatatatTGTCGGTTCTGTCTTGAAAGCTATGAAGAGTATGTCAAGCATTGCTTCTGCATAAGTAGCAATATGCAATTTCAAAGTAGATGCCttacatttttactaaaaaaaaaaaaaagaaaaagtgaaaaaagtgacTTGTTATAAAATGCGTTACAATCACCACGCTGTCCTGCGTGATTAAACTCTCtcacaatcagaaaaaaatgactttgcTATTCTTTATTGTTTTGCTATCTTGGAGATATTCCCAGTTGTAGCCTTATCGAGATGTCAGTCAGGCTCGGGGACACCGTATTAGCTCATTATCTATATTTTCTGTTCTCTTTGTGATAAGCTGTGGACTTCAGAGGAAGAGCCTTATCTGTTCCCCATTTGGTCTGGAGGACCAAGATATCTCACTGCAGATTAAACGTTTAGCACTTATACAGCACATAGGCAATCATCCACCTATAGTGTCCTTTCAATTTAACACTGAAGTCTAAAACTCTGTAACTCAGGCATAATGCTACATGGGGCATTATCAGCATCAGTTGTTAGGTTTGCTTTCAAGACGACTACGACATTATCAGATTTACACTACGTTCCTGCTGTTTGCACTTAAGCCCAACTACCAGCCAATCATGCATCCTTCATCATTAAAACCAGTCCTCAGAACAAGAAACACaaattcaaaaaaatattaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194778 lncRNA upstream 33439 24066946 ~ 24071896 (+) True G143928
TU194766 lncRNA upstream 58893 24045265 ~ 24046442 (+) True G143919
TU194707 lncRNA upstream 84825 23962181 ~ 24020510 (+) True G143867
TU194676 lncRNA upstream 312157 23792939 ~ 23793178 (+) True G143841
TU194621 lncRNA upstream 433464 23670856 ~ 23671871 (+) True G143793
TU194821 lncRNA downstream 49432 24189634 ~ 24189882 (+) True G143964
TU194830 lncRNA downstream 141832 24282034 ~ 24283150 (+) True G143973
TU194860 lncRNA downstream 287860 24428062 ~ 24428498 (+) True G144000
TU194864 lncRNA downstream 417080 24557282 ~ 24602402 (+) False ppp3ca
TU194880 lncRNA downstream 549593 24689795 ~ 24690175 (+) True G144014
XM_007238716.3 mRNA upstream 133763 23946103 ~ 23971572 (+) True arl5b
XM_007238723.3 mRNA upstream 199831 23813237 ~ 23905504 (+) False LOC103035300
XM_007238724.3 mRNA upstream 199831 23835631 ~ 23905504 (+) False LOC103035300
XM_007238721.3 mRNA upstream 199831 23848107 ~ 23905504 (+) True LOC103035300
XM_007238725.3 mRNA upstream 199831 23848107 ~ 23905504 (+) False LOC103035300
XM_022678222.1 mRNA downstream 296177 24436379 ~ 24602384 (+) True ppp3ca
XM_022678224.1 mRNA downstream 296177 24436379 ~ 24602384 (+) False ppp3ca
XM_022678223.1 mRNA downstream 296177 24436379 ~ 24602384 (+) False ppp3ca
XM_022678225.1 mRNA downstream 296177 24436379 ~ 24602384 (+) False ppp3ca
XM_022678240.1 mRNA downstream 475909 24616111 ~ 24648725 (+) False LOC111194343
TU194671 other upstream 189253 23827948 ~ 23916082 (+) True G143836
LOC111194174 other upstream 698441 23403688 ~ 23406894 (+) True LOC111194174
TU194568 other upstream 710095 23385168 ~ 23395240 (+) False LOC111194251
TU194884 other downstream 566881 24707083 ~ 24711533 (+) True G144017
TU194997 other downstream 716804 24857006 ~ 24871749 (+) False LOC111188189
XR_002651001.1 other downstream 752790 24892992 ~ 24894553 (+) True LOC111194253
TU195051 other downstream 858571 24998773 ~ 25004171 (+) True G144146
TU195235 other downstream 1235796 25375998 ~ 25378765 (+) True G144270

Expression Profile