RNA id: XM_022678294.1


Basic Information

Item Value
RNA id XM_022678294.1
length 5795
RNA type mRNA
GC content 0.46
exon number 37
gene id col25a1
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 26116456 ~ 26444978 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agtgtgagctgCTGAatatgtgtgagagagtgtgagaaagtgaGCTGCTGGTTGAGTGAGAGAGGAGTGCTGCGCTCCTCAAATCAGAGAGGGAGGCGGTGCTGTTTGAACGGAGCGCGCGGAACGTGCTGCGCTCGCGCCTGTGTTTGGTTTCGCTGAAGTGCGCGCGGATCCAGTGCGGAGAGCGTGTGCGCGCGCCGCGTTTCAGCGTGTTCTCAGCGCCGCAAACTTCAGCTGCTCGCGCTGCGCAGACATCCTCTAACCCCCCCACgctcccctctctctcgctctctctctctccctctatcagaccctcactctCTGTGTCTATCACTCACACACGCGGAGCGTTGACGTCACACCGTCCGTAGAGCGCGCGACGCTGTGGTGGTGCTGTGAGTAATACCGGACGGCGAGCGGCTGAGGCTCGCGCTCATTTCTCCGCGGACAGTTATGAAGGTACTCGGAATGAACGAGGCGCGCCAGTGCGCCGCTACCGCCATCATGGAGAGCAGCGGCTCGGGAGCGAACAAACCGCGGCGGCGGCACTGTCTGCGCGCGGCCGTCAACGGAGCTCCGTTCGTGTTCTCCGCCGTGTCCGTGGCTTTCTGCGTGCTGCTGGGTGTTCAGAACAACGACGTCCTCAACCGAGTGACGGAGCTGGAGAGCGCGCGCCTGTCTTGCCCGTCCTCAGCGCTGTCAAGCGAGCAGATCAACCTGGCCATTCAGGAGAGAGTGGACGAGCTACTGGCACAGCGCTCCTACGAACAGCTTGCCCGGATAAGGACAGCCCGCCAGACTTCACCTGAATGCAACTGCCCACCAGGGCCACCAGGGAAGCGAGGAAGAAGAGGGCGCAACGGAGACCCTGGACCCCCTGGTCCACCGGGTCCAAAAGGAGACAAGGGTGATCAAGGAGACCAGGGGCCGCGGATGGTCTTCCCTAAGATCAATCATGGCTTTCTTTCTGCTGATCAGCAGCTCATTAAGCGCCGGCTCATTAAGGGTGATCAGGGTCAAGCAGGCCCACCGGGACCTCCCGGACCTCCAGGCCCTCCTGGTCCCAGGGGACCCCCAGGGGACACTGGGAAGGATGGCCCTAGAGGACTTACAGGGCTACCGGGTGATCCCGGAAATCCAGGAGAGGTCGGCCCTGTGGGACCTGAGGGCCCTCCAGGACTCAAGGGTTCCATTGGGCTGCCTGGCAATCCAGGTAGTGACGGATTAAAGGGGGAGGTTGGTATATCAGGATTAGATGGAATTCCTGGTGCCAAGGGTGAAAGAGGAGATCGAGGTGAAAAGGGTGACATGGGAGAAGATGGCCAGAAGGGTGACATCGGTGAGAAGGGTGATTCAGGGTCATCTGCTGCTGGAATTAAGGGTGAACCAGGCGAGCCAGGCCGAAGTGGACAAAAGGGAGAGCCAGGACTTCCAGGGCTGCCTGGACTTCCCGGAATAAAGGGTGAACCTGGTTTCCTCGGACCTCAGGGTGAACCGGGCCTTCCGGGACTGCCAGGAACAAAGggaGAGCGAGGAGAGTCTGGGCCAGCAGGAAAGGGTGAGCGTGGAGACATTGGACCAGCTGGACAGAAGGGAGCACAGGGGGAATCTGGAACACCAGGCCTCAAAGGATCCAAGGGGGATTCAGGAGATAAAGGAGATTTTGGCCTCATGGGGCCAAGAGGCCCACCAGGAGATAAAGGTGACCAGGGCACAACAGAAATCATTGACTACAATGGAAACATCCAGGAAGCTCTTCAGAAGATAACCACTATTACAGTGACGGGTCCCCCTGGACCTCCTGGACCACTCGGACCACAGGGCATCAAGggTGATCAAGGTCCTCCAGGTCTTCCAGGCCTTGATGGAGAAAGGGGTTACAAAGGTTCAAAAGGAGACATGGGCATGCCTGGTATATCTGGAGATAAAGGAGCCATAGGATTGCCTGGACTACCAGGTGCCAATGGTTTAAAGGGAGATAAAGGTGATGCGGGCCTGCCTGGACCTCAAGGACCATCAATTGTAGGATCCCCTGGAGCACCTGGGCCACATGGCCCCCCTGGTCCAATGGGCCCACATGGATTTCCTGGACCAAAGGGGGAGCCAGGTTTGCATGGTGTAAAAGGCGTGAGAGGGGAGCCAGGCCACAAGGGTGATCGAGGACCCATGGGCCTCCCTGGGATGGATGGCCCAATTGGTGCTTCTGGCCCTGCAGGTCCTAAAGGAGACAGAGGTGAGAAAGGTTCTGCTGGTGAGCCTGGGCCAAGAGGACCCTACGGACTTCCTGGTGCTGCTGGAACACCAGGCCTGGATGGGTTACCAGGCTTAAGGGGAGAGAAAGGCGACGTGGGGgaaagaggagaaaagGGTTTCCGGGGCTTTAAGGGTGAAAAGGGCGAACCAGGCCAGCCTGGTCTGGATGGGCTGGATGCCCCGTGCCAATTGGGTCCAGATGGACTACCGATGCCTGGCTGCTGGCAGAAGGGAGTCACACCTTGGCTGGTGGCCTGAAAAGTGGAGATAGTGATTTATCTGGAGGTAGAAAACCAGAGAGAGCAATTgttggtttgcttttgctttatTGGCCTTTGTGGCAGCGCCTCTGTTTTTCACTTAAGTGAATCTTAAGTGACTCCCTGCCTCACGTTCTCAAGAGAACGAGCGACCACCAGTGAACTTTCTGATAGGGTGAGCGGGATGAGCAGGAGAAAGGGGCAGCTGCTGTCCAGTCTTCACTTCAATCATAAGTAAAGTGGACGACAGATGGACGGAAACCGCGGCCCCAATGTATTTCGATGCATGGACCTCACAATTCCTTGTCTTGGGTGTGGCAAGAGGGTGGGgctttctatatatttatatatatttatatatatatataaacatacccCTTTCACCCCTTGGAGCGCCTGAGCACCGTAGCAGGAGGCTACACATGATGTGATCTACTGAGAACAACAGGATGACAGGATTTCTTTCACGACTACACCTTTTCATtcagtcatttatttttttactttttattgatgatttgatttgatttctttgattttaattcTAGCCTTTGGTGCCTCAAGCCTTTTATTATTCATTCCCTTATATTGTACAtctttttacatacattttgtgCTTTGGCTTTGTGGAAATGCTGaaagaatataaaatgtttaatagggctgcacaatatgaAGCTTCAGCATCACCATTGCAGTGTACACATATGCAGTATTCACATTACAGAACACACAATGTCATATTGTATCAAACATCTATCAGAGTTGGAttcttttttgcttaatatcatttattttactccaaccTTAGATAAGTAATTGACTGAATTATTAAAAGCATGGCATGTTGGATCACtgatatttggtgaaatcagTGTGAACGTGGtgttaaattatgtaatttgtaATCAACGCAATATTTATTGCACATAAACAACTATAACCTaactaaatgtacatttttcccagtattgtgcagccctaatgtttTATAAGGAATACAATATTGAAGATGATTGAAggtacagacacacaaacagatatacacactgttcGCACATTGTTAACGCAGTTAAGTGCACTGAAACAGaagtgttgtgttgtttttgaaatGCTAAAAGCTAATTTGTAGGGCTTCGCATTGAGAAGGGACGTCGTTTACAgggttgttcttttttttttacgcctCAAAGAAGGAATGCACTCCACTGTGCGAAAGCTaacaaagctaatgctaatctctCCAAATGCCATTCTCACAGGTGCTTCTGgttttgattttattatttgcttCACCACCTCTTATAGTGTAGATTCAATGTAAATATTTCCAAACACAAAAATTCCAGTCAAAGCAAGGAGGTGCAGCGTAGAAACCTCTTGGTCTCCAAGCTCAAGTTAACATTGTCTACCAGAGCAGTGTTATGTGCAGAAGAAAACAGTGAGTGATGTGACATTCCAGAGCCATTTGAAACAACCTGGTCATGTAGTTTTAGCCATTTTCTGACTTTTTGGTCATTTTAGCTATAAAAATATTGGCTAGGTGGCCAAATCTGCAGCCAAAGGAGACTTTGGACAGAATCTTTTCTACATCACATCTCATCAGCCTGAGCTGCCTGTTCTTTGCTTTGGATCTGTTGggcatttttattcatttttgaaGCAGCCACATGgcagcttgtttttttattattattattgtttgttgtttgtataTACAGTTTGTATTAACTCAAAAAATCTGCATTCGCTTTTATACGTTATAAGTAATGCAGCGTTAATTTTATACTTAAGCATATTGCTGTCAACAGAGGCATTCCTTCTAACGTGGGGTAGCTTTGAAGGTCTTTTTACCTTTCAGTATTATACATACAACAGTGTTCTGTGGAGTTCTGCACTGAAATGTGAGGAGATAGTAAAGAATGAATGCCAGCTAAGCATGGACAGAAGGAGTTTTATTAGTTCTATTGTCCTATCTCCACTCTATTGTATCGTTAATATTATTACACTATGCCATAATACAGTGCAGTTTATGTTAGGGCCCTTACTTTCAGTCTATTATGTGTTAGACAGCCGATTGGTCGCACTGTTCACTGGCCGCTCCCTTTATGTCAAAAGCGGAGTGATGACAGTAGTGAAGTAAGAATACACCACATGCAGTATTCACGCgctatgtaatgtaatatagccccgccccctccatAATCCTTGTTACATTGAATGTACATGAATATATGTATAGTGGACTATGCGTGTGCAGTTAAATATTTGCTCATTTGACGAAAAGTGCAATTTTTACTTCTCTTCTATGTATTGACATGTGAACCATATTCAGTATACGAATGCAAATCAAAGTTACACTCATTTATTATTGTAAGTTATACAAATATTTGTTAATCACTTTTACATTGGCACTGGggacttttgttttgattttaaaagtgcaAGTATGAGCGAAAACAAGTCTCAAAGCTAATAGAATAAGACTACAACATTCTCACATTCTCACATgattagtttttcagttttcagacTTTCATTTAGTTCTGTGTCCTTATAGCAGTCACACTATGTGGCTCTGTTATCAAGCCATTAAGGTTTAAAAATTTTCTTAAATCTGTTGTGTATTAAAATGTGTCTCCATTTATTGCTTTCACACTTTATGAAACAATGTTCAATGATGTTTTGTCGAACTGTATCTTAGTACATTTCATTTTGAATGCATGAGAGCCAAATGCATCTTTAAAACTTCTTTTCTATCAACATTTGCATaacatattttctatattttcaaCATCGGTGCTGTACaacaagtttttttattaaggttgttgtctttattttttttttgtgtcagaaGTGGAAAATTCCACTTTTCATAAATGATCACTGTTGAAATGCCCAGGATCTCTGATCTCTGGCCTGtttttcttcacattttttaaaagttgtttttttatgtccccccccccccccccaaaaaaaaaaaaaagcagcagacTGTCAGTTtcataaacatgaaaaatgtatgGATATGTAGAGATATGTACCCCTAGgaaatttgtatttttgacaCATCATACATCACATTCTCTCGCCTTTATTCttgttttacttttgttttactttgttttatattattgatttttttttattaattttctggAAAATTGCTTCACAATGTTATCGAGTGTCTGTAAATGGCTCATgacatttcattttaaacacatttcatgtGATATCAGTGTTGGAGCCAAATAAAATCTGTTGTTTTTCTCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195407 lncRNA upstream 98771 26017397 ~ 26017685 (+) True G144403
TU195406 lncRNA upstream 100019 26013453 ~ 26016437 (+) True G144402
TU195405 lncRNA upstream 100472 26013410 ~ 26015984 (+) False G144402
TU195408 lncRNA upstream 104295 26011864 ~ 26012161 (+) True G144404
TU195404 lncRNA upstream 104961 26011070 ~ 26011495 (+) True G144401
TU195496 lncRNA downstream 25806 26470784 ~ 26472561 (+) True G144479
TU195499 lncRNA downstream 28632 26473610 ~ 26475430 (+) True G144480
TU195535 lncRNA downstream 51807 26496785 ~ 26497142 (+) True G144512
TU195554 lncRNA downstream 80795 26525773 ~ 26526978 (+) True G144531
TU195584 lncRNA downstream 162366 26607344 ~ 26607785 (+) True G144556
XM_007255204.3 mRNA upstream 312071 25801919 ~ 25804385 (+) True saxo1
XM_007255191.3 mRNA upstream 440084 25673233 ~ 25676372 (+) True LOC103042207
XM_007237453.3 mRNA upstream 495393 25617325 ~ 25621063 (+) True LOC103047430
XM_022678278.1 mRNA upstream 671909 25434575 ~ 25444547 (+) False rce1
XM_022678299.1 mRNA downstream 3814 26448792 ~ 26467820 (+) True etnppl
XM_007255051.3 mRNA downstream 157037 26602015 ~ 26607191 (+) True rpl34
XM_022678301.1 mRNA downstream 490105 26935083 ~ 27035079 (+) True focad
XM_022678310.1 mRNA downstream 655846 27100824 ~ 27115844 (+) True ndufs2
XM_022678330.1 mRNA downstream 803373 27248351 ~ 27251123 (+) True LOC111194356
TU195371 other upstream 327614 25786737 ~ 25788842 (+) True G144372
TU195320 other upstream 462206 25653006 ~ 25654250 (+) True G144333
TU195258 other upstream 641762 25472123 ~ 25474694 (+) True G144290
TU195235 other upstream 737691 25375998 ~ 25378765 (+) True G144270
TU195051 other upstream 1112285 24998773 ~ 25004171 (+) True G144146
TU195623 other downstream 305857 26750835 ~ 26754442 (+) True G144584
TU195662 other downstream 362738 26807716 ~ 26812127 (+) True G144613
TU195731 other downstream 761764 27206742 ~ 27208591 (+) True G144671
XR_002651040.1 other downstream 2181066 28626044 ~ 28658921 (+) True LOC103038323
trnas-uga_32 other downstream 2652349 29097327 ~ 29097408 (+) True trnas-uga_32

Expression Profile