RNA id: XM_022678301.1


Basic Information

Item Value
RNA id XM_022678301.1
length 5987
RNA type mRNA
GC content 0.53
exon number 44
gene id focad
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 26935083 ~ 27035079 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTCTCGGAGTTGCTAATGTGAGCTGGAGGAGCGGAAAGTTTACAGAGCTGTATGGAGAAACTCCAGTGATCTGAAGAGATGAATGAAACTCTAAAGAAGATGTTGCAGTTCCCCAGCTCGCTCATTCAAGCACAGGCTGTGAGGAGTCTGGTTACCGCAGTGCTGAAGGAGAAGGGCCACAATGAGAAGATATCAGAGTCCACTACTCAGGGCGCTGCTCTGGAGGCTCTGTGGGAGCAGTGCAGCAGTGAGAGCGGGGTGGTGCGCTCAGCATGCTGTGATGCGCTGGTGCTGCTGGTAGAACAGGGGCATGCTGACCTGCAGTATGTTCTCAACAGCATCCTCAACCTACTGCCTTCTGCCAGGAGTGTACAGGGGCTGATTAAGGTAGTTGGGAGGCTATTGCAGATCCAAGCAAGTcaaagagacaaaacaacaccCTTTACATGTCCGTACTCCATCAGGAGCAGCCCTCACCCGTACATCACGGTTCTGGAGAATCGTCCTGATTGCTGGCCCGCTCTGCTGCAGGAGATTGATGACTTCATCCAACTCGCTGCTGACAAAGATGAGCCGTTACATATTTCCATGCTGGCTCCGTTCCTGCGTTACCTTTACTGTGAGCCTCAGAGACTGGCGGAGAACGCCCTGCTCAGACACAGCCTGCTCAGAGTCCTGCTGCAGCCCAGAGAGGGTCAGGACTCCTCCTGCACTCGGGTCACCAACGAGATCCTGCGCTGCCTCGTCCAGCTCTTCCCTCATGTACTGgtGGACAGTGTTACGGCTGTGGTGGAGCTGAGCTCGTTGGCTGAATCTCTGATTACTGCGCTGCTCGGGGAGCCGGAGTGCTGGAGGGCTGAGTTAGCTCAGCTGGCGCTGCAGCTGGTGTGTGCCTGTCAGCTCAGCCTGCAGCTGGGAGGAGAGCTCAGGTCCCTCCTGCACACCCTGCACCAGATCCTGCCCGTCTGCAGAGAGGATCTCCCGTCTGAGCAAGTGATCATGGGGATCTCCCTGCTCCTCCTCAGAGCGTCGGCCTCGCAGCAGAGCGCCCTCCTGGAGCTCGCTGTGAAGATTGTCCCACCTGAGGTAAGGCCTCCCTGGGGTGCCTCGTTGTTAGTAATGCCCCTGCTGCAGGTTCTTTCCTGCTCCAACCTAATGGAGGCGCTCTCAGACCCACAAACACAGAACAAGAACCGAGAATTAGCTAATTCTCTGCTGGAGACTGTCCAGAAGGAACCGTGTTGTCCAGTACAGAGCAGCACACAGCTGACTCTTCCTCTCAGTACATGGTACAGCGAGCTACGGGTGGCCACCAGCGTTCTAAACCAGATCTCTGAAGAACCCATAGCCATAGTGGAGTGGCTCTACTCTGTTCAGTCCACTCTTCCTCTGTGTGATCACGTCCCAGACGCTCTACCGCTCCTTATCACTCACCTGATCATCAGCAGTGAGGGGGACCTCTGCAGGCTGGCACTGGACACCGCAGCTGCCATAGCTGAGGCAGATCCTGCACAGgtcccCTGTCTTCTCCCGGTTGTGATGCTGAAGCTGGGCCAGGTGTCTGACCCTGCTTTGTCTCATGCTCTGCTCTCCACCTTACCAAAACTGGGCACACACAAGTTTTGTATACCGCAGGTTCTGCATGTACTGCAGGCTCTGGCCAGCTCCCCCAAACTGAGGGCTGTGGCTCTGCGTCTTCTGACCTCCCTGTGGCAGAAACAGGACCGTGTGTATCCAGACCTGCAGAAGCTGATGGCGGTGTTGGAGAAGTCCTCAGTGGTGGTGGGAAAGGAAGCTCAGTGGGAGCAGATTCTGGCCAGAGCTGCCTCTGTACGGGACATCTGCAGAGAGAGGCCTTACCAGCACGGAGGAGACATGCTGGCAGCCATTACAGACATGCTGACTCAGTGCTCGAGGAAGGATCACGCCACTCCAGCAGCGCTGGCCCTGCAGGGTCTTCAGGAGCTCTGCAGAGCTGAGGTGGTTGATATAGACTCCACATGGCGGGCTCTCTCTCCCAAACTGAGCTGTGAAACGAGACCTCTGGTGTTAAAGGCCACCGCTGAGCTCCTTTCACTCGTGCCTTCACTGCACGTCAAAACAGAACAGTATGAGAGTTTTAAAAGTGAAGTGGTCAGTATTCTGTGGAGTCACGCTCTGAGTCAGGATGCTGATGTGGCTAGCAGTGGTTACAGAGCATTGTCTGAATTCCCAGAATCCTCTCACTCGGTCATGCATCTGCCTGAGCAAGCCAGACCAGAGATGAAGCAGCCTGAAGACGAGGATGACgaggagaaagagaataagaagGAGGAAGATCTAACTGTTCCGGGGACTTCATACATAAAACTCGTTGCTCTTACTCCGCGGCCAGTTTCAGCAGCACTTGAGACCTTCCTGACAGCTCTTGTAAGACAAGAGATGAGTCAGATGCCCCGTGGAGTGTACCACTCAGCCCTGAGAGGGGCGAACCTGCGCTCAGACCAGGGGAAAACTGTTGCTGGAATCCCTGCATTCATGCTGAAATCTTATGAAAAGAACAAGCAGCCAGGTCTGAAACCTGGACTAGCAGCTGGTCTGCTGTTATGTTATGACCTCCCTGTCCAGACTGACCGAGACGGACGGCCGATTAGCCGCTTCATGGTCAGCAGAGGGCGGAGCTTCCAGCAGACCTTAACCAGCCTCATCCATGAGGTGAACATCCAGCCTTCAGAGTGGCATCGCTCCCTCCTTCTTCCTCAGGCCTGGCGCGGCTTCATGAGCAGAACATTCCATGCTGTGCTGCAGGGTCGGAAGGCAGAGCTGGAGATGTTGCAGAAGCAGGGAAAAGAGAGTCCAGAGGAGCTTCAGTATAAACAGCACTGTGCCTggctctgGGTCAGAGACCAGCTGACTGATGTGGTGAAGTCTGCAGCCAAGGACAGTCCGGTGGTGCAGGGGAACTGTATTCTGGCTCTGAGTGGTCTGGCTGTGGTCCTGAGCCGATATGAAAGTAGCCTGCCTGCACAGAGTGATGGAGCAGTTGAGGTGGGGCCAGAGATCTTACCCACTACCCATTGGCTGTCCATGGTGATTGACACTCTCCTAAGCATTGTGAGCAGCAGCAGTCGACCCAAAGGGCAAGTCTTCCCCTGGTTCGTCCATCGTTCCTATTCAGGTGAAAACACAGCCAGTGGGATTGCTCGCTCCTGTGCTGCACTGGGTTTGGCGTTGCTGGTTCCAGTCCTGGTCACGTCCCACAGAGACGCAGTGCCCACAATACTGTCCACTCTGAGCTCAGGCCTGCCTGGAGCGCCCACTGCTGACGAGACTCAGGCGCTGCAGTTCCACAGCGGCCTGGCCTTGGGCATGCTGCTGGCCTGGCTGAACGAGGAGAGGGTCAGTGACATCGCTGGGCAGTCCATGTGGGAGCTGCTGCTGAACACTTTGGAGCCTCTGGAGGCGTGCTGCTTCAACACCCAGCTGGAGTACAAtgctgggTGTGTGTTGGCTGTAGGGCTGGTGCTGAGCTCTCTCTGCAGCAGTAGTGAGGTTGAGCAGCGAGCTCGTGTGGCTCTCTCTCTGGACAGGCTGCTCCAGAGTCTGCaggacagcagcagctgtgggCTGGGGCGCATGCAGCAGGAGGTTCTGGCGTACTCTGTGGCGTGTGTAGGAGTATCTGCGTTTAGTTCTGGAGTTGTTGATGCCAGTAAAGCCGAGGAGGTGATGAACGTCTTGCGCTCCGTGACTGAGGAGAGCCAACAGACTCCAGGCTTTGCCCTGGCTCTGGGTCTCACTGTGCACGGACTGTCCTCCTGTGGTCACGGTAAAGCTGAAGACATCCACCCTCGCCTGCTGGCTGCATGGACCAAGATCTTACTGGCAGAGGGCTGTCCCACCATGCAGAGACTGGCGGCTCTGAACGGACTAATCGCTCTGGTGGGATCTGAAACTGGTCTCCTTCAGCtgaagagtgagacagagcagtCCTCCCAGCAGCAGGCCAGACTGAACGAGGTTATAAGATCCATTACACAGATTATCTCTTTCTCAGGAGCAATAGGTCTTCAGTCTAACGGAGCGTGTCTGGTGGGCCACCTGCATTTAGCCCACATGTCCAGCAGCCACAGCAGAACTGCAGtgCCTCAAGACTTCAGCTATCTCCCAGAAAGGAGCCTCATCAGAGCTTCAGTTGAGTACATCACTGAAGCAGGAAGGAAAGGGCCGGAGTTCTTTCCTCCTGATGGAATAAAGGTGGTTTTGGCTCCACTGGCCACAGTGGGAGATAATTTCCAGTATCCACCCGTCAACTGGAACGCCATTCTCTCACCCATGATGAGACTCAACTTTGGTGAGGAGGTGCAGCATCACTGTCTGGAGTTGGCAGCCAATCAGGCACAGTCTTCCCCCAGTGCTGCACTGTTCCTGGGCGTGTGGCTCGCTCCACCTCTCGTCCACAGCCTGAGTCTTCGTACGAGAGCACTTCTGTACGAGTGTCTGTGTAGCTGGATGAAGCACGTGGCGGAGGATAAGCTGCAGGTGTATGTGGAGAGTCTGGCCGTACAGCAGTTTAATCCAGACACCCGCGCTCAGCGTCATCCCCTCTGCCTCGCCATCCTGCAGGGCCTGGCTAAGGCCATGTCCCTCCCCAACCCCGCCCAGAACTGCTGGAGTTCCCTGTGCACCACCACAGAGAAGATCTACAACCTTTTACCAGATCATATACAGcccaGTGAAGTGGAGCTCTATGAAGGAATCTGTTCCTGCTTGTCAGAAATGAGCGACACAGAGATTGACAGGATTGTCAAAGTCACTGAGGCCAATGTGGAGAAGACCACCTTCATTCTGTCTTACCTCAGTTCCAAGGGCAGGATCCCACTCCTGGGTCTCAATGATATCATCAGCACCGTCCTGCAGAAGGGGAAGACTGAGCGAATCAGTTGGCTTTTCCTTCAGTGCCTCTACCAATCACGTTTGGCCTCCAGTCCTAACACAGGTGTGTCTAAAAGAATGGAGTGGCTGCTGGAGTTAATGGGACATATCAGGAAAGTGACGTATGGAGCATCAGTGAAATGTAACAGAGTAAGAGAGGGAACTGATTTCCTGCTGGAAGTGTTTGCTGCTGCTGTGGTGTCCTGGGCCAATCACTCCACGCCCGTCATCGTTGGCGTCCGAGCTCAGTGGTTTCCATGGAGACAGTTTTCAGCGGAGTACCCAGACGTGCCCCGTGGCCTGTATGTGAACAGCGTTAGCACTGATGAGTCGGTTAAACAGTGTGTGCTGGCCGTTCCTTACGCTCTGAAGCTTCTGCTGGATAAAGAGCCGTGGAAGTCTCAGTCCCAGAAGTTCATTGATTGGCTCTTCAGCATAACGGAAGCTCCTGAGGAAGTTTTATCACCCACAGCGATCTCTACAGCCAGAGCGGCTTTACTGGCTCTGAAATCCAACCCAGAGTTCAAGAAGAAGACCGTCTGGACCAGAGCATACGGCTGGTGATGCACTCAGTCGTTGCTCGCATTGCTTTGCttaataaaacctttatttttgttacaatgTGCGTTGTGGGCTTGAACAGACCCTTCGAAAGTAGTTTTTCAAAGATTGTAAAGAAGAAATGTATTGTACATCATCATCACTTCAGTCATACTAATACCACAGCCCTTCATTGTCACTGTGAAACACACAGTCTTTTCAGAAATTACCTGTTACATAAGATTAAAAGTATTATCAGATGCTAATGACATGTTTACACCACAGAACCATAGATAAAGATCCAGAAAGTATGTGGTTATAGTGTGTTTAAGCACTTaatgcagcaaaacagcaaCATTTCCTTGCAGATCAGTTTGATAAAACCTTTAATCTGTTAATCTGTTGCATGGAAAGGTACAATAGAAAATCtctttacattaacatttttaaaatgtttacattttacatgtgACAAACTCCTCAAGTCTTAATGGTCATTAAAAAGTGAATGATCATGAGTACCAAAGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195666 lncRNA upstream 117756 26817035 ~ 26817327 (+) True G144617
TU195660 lncRNA upstream 133062 26798916 ~ 26802021 (+) True G144611
TU195656 lncRNA upstream 149319 26783243 ~ 26785764 (+) True G144608
TU195611 lncRNA upstream 213926 26720432 ~ 26721157 (+) True G144573
TU195581 lncRNA upstream 326399 26608211 ~ 26608684 (+) True G144553
TU195695 lncRNA downstream 48251 27083330 ~ 27285363 (+) True G144642
XR_002650993.1 lncRNA downstream 217279 27252358 ~ 27255652 (+) True LOC111194210
TU195747 lncRNA downstream 227171 27262250 ~ 27263283 (+) True G144686
TU195745 lncRNA downstream 262366 27297445 ~ 27300088 (+) True G144684
XR_002651037.1 lncRNA downstream 400734 27435813 ~ 27438301 (+) True LOC111194352
XM_007255051.3 mRNA upstream 327892 26602015 ~ 26607191 (+) True rpl34
XM_022678299.1 mRNA upstream 467263 26448792 ~ 26467820 (+) True etnppl
XM_022678293.1 mRNA upstream 490105 26116456 ~ 26444978 (+) False col25a1
XM_022678310.1 mRNA downstream 65745 27100824 ~ 27115844 (+) True ndufs2
XM_022678330.1 mRNA downstream 213272 27248351 ~ 27251123 (+) True LOC111194356
XM_022678314.1 mRNA downstream 266787 27301866 ~ 27305675 (+) True LOC111194351
XM_007255175.3 mRNA downstream 995678 28030757 ~ 28084025 (+) True adgra3
XM_022678320.1 mRNA downstream 1264417 28299496 ~ 28368962 (+) True LOC103045778
TU195662 other upstream 122956 26807716 ~ 26812127 (+) True G144613
TU195623 other upstream 180641 26750835 ~ 26754442 (+) True G144584
TU195371 other upstream 1146241 25786737 ~ 25788842 (+) True G144372
TU195320 other upstream 1280833 25653006 ~ 25654250 (+) True G144333
TU195258 other upstream 1460389 25472123 ~ 25474694 (+) True G144290
TU195731 other downstream 171663 27206742 ~ 27208591 (+) True G144671
XR_002651040.1 other downstream 1590965 28626044 ~ 28658921 (+) True LOC103038323
trnas-uga_32 other downstream 2062248 29097327 ~ 29097408 (+) True trnas-uga_32
XR_002651042.1 other downstream 2120646 29155725 ~ 29170570 (+) False LOC103041452
XR_002651041.1 other downstream 2120799 29155878 ~ 29170570 (+) False LOC103041452

Expression Profile