RNA id: XM_022678314.1


Basic Information

Item Value
RNA id XM_022678314.1
length 3191
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC111194351
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 27301866 ~ 27305675 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attattattagtagtagtagtagtagcagtagtagtagtagtattattacaGTAAGTGAGGAGAGTTTAATGTAGTTATGTTAGTgatcacacatttttaaaataatatatcaatTATCTGATTGCTTCCTTTTTCCTCTGTATCTGTTCTTTTCTCTTCACTGATTGGATTACAATGTTGCACTGTCTGCATTACCAGccagtgctggatgttaaactCATGTCATGCTATCGTGGAGCTAacattatgtatatttatttattattacatatttatatatcattattattactacattattGTGCTAACATTGGGCTAGTGTTATTCTAGCAGTATGCTAACATttcaaatttaaacaaaatgtactGTGCAAGTCACCTAGGATACGGTGGTGACATCaccaagccactgtatataggGACGTGTGTCTCTCAGTATTCATCAGAAGGTCAGTGTATACCTACTGCACTGGACACCTGAGCCTTTTCTCCATATAAAGATGGATTTTCGCAAGAACGTGGAGCCCTTTTTTCCACCGCTGCCGCCCTCTGGACCACGTCCCATCAGGCCCAAGAGTCGCAGGAGTCTGAGGGTGCTGAAACCGGCCTGGCTGGAGGACTCATTCACATATGAAGAGTTCATTTCCAGACCATTTCCTCAGCACCCCGCTCCTCCACCTGTACCTCTGCCTGTCGCTACCCAAACGATTGTGGTGAATAAGGTGCCGGCCTTCTATTCACCAGGTAGCAGGATTCCAATCCTGGACAGGCGGAGGAAGCAGAGGCCAATCCAAGCTGTGGAGCAGCCTACAATCAACATGGCTGCCCACAGCATCCAGGACAAACCTGCACAGGTGGAGAGAGCTCGCAGGAAGCCCAAACACATCAGGTCAGCTCCTCAGGTTGTTGAGAGAGGTCAGGGAGTGGAGCAGCCACCGGTGCTACCAGCCCTGACCCGGGAGGAGCCCCTCAGCAGGCCTGGGGAAGCTCTCGGCCAGGCGTTGTGCTTGCTGCAGGACGAGGAATGGGAAAGAAAAACCGAGGGACTGCGGCTTGTGCGAGCTCTGGCTGAACACCACGCTGATTTGGTGCTGCCAGAGCTCCACAGCATCAGCACAGCCGTCATTGAGGAGataaaaaaccTCAGGACCATAGTCTCTCGGGATGCCATTTATACCATGGCCCACCTGTTCCATCACCTGCAGCATCATATGGACAGCGAGGTCGAGGGTGCTGCTCGCGCCCTCCTTCATAAGGCTGGGGAGGCCAGCCTGTTTATTAAGGAGGGTGTGGAGCTAGCCCTCAGCATGATGGTGCACTCCTGTTCGCCTGGCCGAGTCCTGCGTGGGCTGCTGGCCGGTGGATTcagACACAGAAACCCTGCCAGCAGGGCAGCCACTGCAGTTTGCCTAAATAGGCTAGTGCATGTGATGCGGGCATCCCGTGTGCTGAATGGCAGGACGTTTACCAGCAAAATCCTTCCTGCCATCAGCACACTGGCGTTCGACGCAGCCCAGGAAGTGAGGACTCCTGCCCGAGCCGCCTTACGTTTTTTGGGCGGGCACAGAGAGGCTGCGGCAGCGGTGGAAAAAATTTGTTTCCATCAGAGATCAGGCCTCAGTCAAACAactacttttaaattaattaaatcaaattaatcacTTGTACAGTTTTTGTATAGAGTTGGGATGTATTCGGTGTTCAGCTGTTCAGAGTGGGGTTTGGTGTCGAAATCTCTGTTCCAGAGAAGCTTACAGAGTTAGAGCtgttcacagtggtggtgaCAGGAACCACATCTGAAGAGGTGGTCAAGGCAGCGACTCCACTTTCTTGCCAGAGGTGGGGTTGCTGCTTGGTGGGAAACACACCGGCCCTGTGGCATCAGGGCTTCCCAGTCAACCAGCTGGGAATGTCCTGCCCCAAAACAAGCCCGGCAAAGCTTGTGAGGGGTTCGCCCAGGGCCGGCCGGCGTCCCCCAGCCACTCTTTTAGAGGCAGTCCACCCTTCAGACATATGGGTCCTGTCTCCATCACTGTGACCAGTTCAGACTCTGTCAGCCTCTCTGGAACAGAGAACACCTGAACACCGAATACATCTCAacaatttgtatttttaccattgcaaaataaaaatcataaaaaaaatcattgtctcTGTCATTATTCAAATAAGTAGAAActagtcagacagacagatagacagtaTAGGTCTGTAGGGATGTATAAATAACAACCATATGCATagactagtgctgggcgatgtGAGGAAAATCATTCATCACGATATGGAAGTTTTTATACCACATTTATaccatataaataaattataaataaacaacactacaacacaGTGACACACAGAGTGAATGAACGTacccaaaacaaactaaaataaacatagcAATGACCCAGTGGGACTCTACTCTTTTTACTAAAGTGTCTATAGGGTccttttttgcttgttttaaatgtgataaAATAATCAGTGTTAGAAACACTTAGATTTGTATTGCTGGTGCCGAACCCTTAAAAAATTGTTGTATTAATcccaacaatattctgtgattaaatcatggataaaatcataattaatttttttaaatgctagtGCTTGAACTGAAATGCACAAGCCTGTAATAAAAACTTCCTTATATAACATATGTCTATTATTAGTATTGTAGTTACTGTACAAATATGTAATgataaacaaactaataaatcaactcttaaacttttaaacactATTAGTGTATGTACTATGAATGAATTTCCAGAAGAACCTAACATTTCTAAAAGTTTGGTATGAGCATCAGCAGTtaggaatcttttttttttttttttttaatgacgtATTGAAACAGAGACTCACATCACATATTACACCATAAATGCTACAACTGCCTCAGTGCATTTCTTTTGCTGTAGTATCATAACGGGGAGGTGAGCAGCATGTCTATACTTGATACGAATTGTGTGGAGGCTGTAAGAATTCTTGGAAGATCAACTGCCAATCCATGAGAAACCACAGAGTTTCACAACAGACCTGCATGGTTGCAAAATTCAGGCATAGTTTACCTTCCTTTTTCAcctgacaaaaaaataattgagagtgaaagaaagaccaaaaaaaaaaaaacctaaaaatgcCTGAGGTGCTTCCTAAAGTATATCCAAATGGTAactataaaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195745 lncRNA upstream 1778 27297445 ~ 27300088 (+) True G144684
TU195695 lncRNA upstream 16503 27083330 ~ 27285363 (+) True G144642
TU195747 lncRNA upstream 38583 27262250 ~ 27263283 (+) True G144686
XR_002650993.1 lncRNA upstream 46214 27252358 ~ 27255652 (+) True LOC111194210
TU195666 lncRNA upstream 484539 26817035 ~ 26817327 (+) True G144617
XR_002651037.1 lncRNA downstream 130138 27435813 ~ 27438301 (+) True LOC111194352
XR_002651036.1 lncRNA downstream 130138 27435813 ~ 27438301 (+) False LOC111194352
TU195872 lncRNA downstream 131401 27437076 ~ 27439508 (+) True G144782
XR_002651038.1 lncRNA downstream 132731 27438406 ~ 27440052 (+) True LOC111194353
TU195931 lncRNA downstream 349508 27655183 ~ 27657850 (+) True G144833
XM_022678330.1 mRNA upstream 50743 27248351 ~ 27251123 (+) True LOC111194356
XM_022678310.1 mRNA upstream 186022 27100824 ~ 27115844 (+) True ndufs2
XM_022678301.1 mRNA upstream 266787 26935083 ~ 27035079 (+) True focad
XM_007255051.3 mRNA upstream 694675 26602015 ~ 26607191 (+) True rpl34
XM_022678299.1 mRNA upstream 834046 26448792 ~ 26467820 (+) True etnppl
XM_007255175.3 mRNA downstream 725082 28030757 ~ 28084025 (+) True adgra3
XM_022678320.1 mRNA downstream 993821 28299496 ~ 28368962 (+) True LOC103045778
XM_022678322.1 mRNA downstream 1105638 28411313 ~ 28445089 (+) True LOC103035875
XM_007255170.3 mRNA downstream 1152229 28457904 ~ 28475027 (+) True LOC103035569
XM_007255169.3 mRNA downstream 1190965 28496640 ~ 28564802 (+) True LOC103035264
TU195731 other upstream 93275 27206742 ~ 27208591 (+) True G144671
TU195662 other upstream 489739 26807716 ~ 26812127 (+) True G144613
TU195623 other upstream 547424 26750835 ~ 26754442 (+) True G144584
TU195371 other upstream 1513024 25786737 ~ 25788842 (+) True G144372
TU195320 other upstream 1647616 25653006 ~ 25654250 (+) True G144333
XR_002651040.1 other downstream 1320369 28626044 ~ 28658921 (+) True LOC103038323
trnas-uga_32 other downstream 1791652 29097327 ~ 29097408 (+) True trnas-uga_32
XR_002651042.1 other downstream 1850050 29155725 ~ 29170570 (+) False LOC103041452
XR_002651041.1 other downstream 1850203 29155878 ~ 29170570 (+) False LOC103041452
TU196444 other downstream 2123563 29429238 ~ 29432014 (+) False LOC111194370

Expression Profile