RNA id: XM_022678327.1



Basic Information


Item Value
RNA id XM_022678327.1
length 3298
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC103035878
representative True

Chromosome Information


Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24783105 ~ 24802986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


aggcgtcATGAGTTGTCAAAGtgtgagtgaggcctgatagtgggtgccagatggatgggacattccatttccatAGTTTAATATTCCTCAAGACAAGTGTCCTGTTCACTGTGTAAACATTATACAAGACATTACCATTACCACCcccagtggacagtgcagtagtAGTGGGTGGTAAAGACTGTGACGGGAAgtttctggctagaattgtccgtgtGAACAACAGACAAGCGACTcaggcagaaatcacatccacattttgTGCAGGAGACCCAACATATCCCAGCATCCCTTGACATGTGGGATATCAGTATATGATTGCATAATAGTATTTTGTACATATCTTGCAGTCCTAACTAACACGATTACAGTCGATTGATTTAGCTAACCAGACTATCTGAACTTTACTCTTCTTAAATATATGGAGAAAAGTATACAATGTAATCTCAAACCCAACTAATCCAAATCTAGGTTTTTGTTCCAAGTTGTGAAGATACCTTCCAGTGCACCTGGCTGACCAGTATTTTTGGGTGATGTGGTGTCATCAATAGgctatttacaaaaatatataatttgcaAATGAGGGAAGTCTGTGGTCAGCTAGTGACGTCTATAAACCTAAACAGCACGTCTTTTGTGTTCTCACCCCCACTGCTCTTTAAATAAGCTTTCTGTTCCAGGTCTGCTGCTTCTTTTACATGATGTCGACCAAATGCAAATGTTGAACTGATAAGTACAGTATTTCCTGGAGATGTTGGTTCTCGGAATCATACTCAACAGAAACATACAAACAGACTGAACACAGAATACTATCAGCGGTTCATAGCTTTGCTTTAAATTAAAGTGGTTTCATTTGTGCTCTTTATTCAACAAGTAGGGACAATACTTGGGACAGTTCACAAGATGGTTCTGCTGGGGCCACTGCTTTTGGCAGTGGTCTCTGTAATCTGGGCTGAGGAGGATTACTTTATTAATGGAACGCTCAATTACACATGGGACAACGCCAGGAACTATTGCCAGATCTGCTACAAAGACCTGACAACAATGACCCCAGGAAATGCCCATATCATTATTCAGAAAGTCATCGCTCTGAATCTCACCTCTGGCTACTGGATTGGGCTTCGTGAAAACTTCAGCGGACCCATTCCATTTTCTCAGTGGTCTAATGGTGCCCCAGTTATCTACCAGAACTGGTATCCTGGTCGCCCTATCCTAAAGAAACCAGAAGTGTTTGTGCCAACATCTCCACCCCCAACTACTAGTACTGATGGTACTACTACTTCCTATGATAGTACTACCACTGCTGGCACTACTACTCATTCTACAACTGCTGGCACTACTACTCATTCTACTACTGCTGGCACTACTAGTACTTCTGGTACTACTCATACTTCAAGCACACCCATTGACGAGCAAATACTTTGTCCAACTTTGGCAAAACTCATTGCTTGTTTTAATGATACAGAGTACATTGTCACTCCCATCACAGATAATGAATTTAGCACTAGTAAATCGAGCACACTCATTATCACCAGTAGTCCTGCTGTTAGCAGCACGTCCCCAAGTACAATACGCAGCACATCCTCCAGTACGATACGCAGCACATCCTCCAGTACGATGCTCAGCACATCCTCCACCACCTATACAACTACCACAGCCCTTATCACCAGTCCATCTACCAGTCTCATGACATCTACCAGTTACTCTACTCCCATTCCAGAAACAGATTATGACTATATCACAGACTCTTGTGTGGCCTTGCTCAGCTTCGGCATGTGGCGGGAAAAGCACTGCTATGAAAGCCTGCCCTTCATCTGTTATGATGAACGATTTACTGGGACGGTGAAAATATCCAATGTGACGCATGGAGGAAGTGTTGTGACCTGGGACAAGGCACCAGGGGACAATGTGGATCACTACAAAGTGGAGCTACATAGGTCCATCAATACCACAGCCGTCAATACCACAGTGTTCACTACCATAGAGTTCCAAAACTTGGAGGCAGGAAAACTCTACACAGTCAAAGTATTCCCTGTGAAGTGCGGCCGGAATCTCAGCTCTCTAAATACCACGTTCTACAccttgCCAATGTCAATCAGCACTTTAACAAAAGTAGAGGTAACAACCAACTCCATTGCTCTCAATTGGAGCAAACCTGAAGGAGGGTGTGATAATTATTATGTAAAGTATGTTGTAAATGGGACTGAACATGAAAATAAATCCCTCAAAATGGAATACAATATAACCGGTCTTCTACCAGGACTACTTCACAATATTACAGCTCGATGTGTGGTCAACGACAGCATATTTGGAGAACCAAGCAAGTTTGAATTAGCCTACACTAaacctTCTCGGGTACAGAATCTCACATCTTCAAACAATGAGAGTTCCAGTGTACACGTCACATGGAGTTCAAGTGATAGCAACAGTTCGAGTTACTCATACCTTCTTATTTTAATAGagaatgttaataaaaataaaataataaatgaaacaaatacAATTCCGGAGAGTACTCTGAAGGGACTCACACCAGGTACAGAATACACCTTGAGTGTGTCAGCGCTGGTTGGTAACCCCTCAGTGAAAGGAGAGGCAGTTAACATCAATGTCTTTACCATGCCTAAGCCAGTCACAAATCTCACTCTAAAAAGCACAGAAAATACCATTCATGCTACTTGGGATCTTACGAATGGAAGTTTTCCATATTTCAGAGTACAgctatttttaaacacaaaaatggaggaacaacaacaacaacaacaacagaaaaGTCCTACAACTTTTCAAACCTAATGTCAACAACACAGTACATCGTTTCAATTTCCACAATCATAGGCAATCTCTCAAGCTGTCCAGTGAATGAAACGACTTATACACTTCCTAAACCTCCTACAAACTTGAACATTACGGTTCTTAATCAGACTCACATAGAGCTGAAGTGGAACCCTCCTGCAGGTGTAAATTCATCACAGAATCTTAAATACAACGTGGCGTACATGGCTCCGTTTTGGAGCATATCTCctgaaacatttaatacaaCTAAAAATTCTACAGTCATTTCTAATTTAACATCTGGGACAAAGTACTGTTTTAATGTCAGTGTCTACGCTGGCAATTTGATGAGTGACCCAGTCCACCAGAATGCTTCAACAGGTAACAAAATTCTTTTTAGAAAAACAGTTCTTCAaacttttaaacctttaaaatctAGGCAAATTTCATAGtatttactgaatcatttgtagtagatacagatatagcTTGTTGTAGATAAAGAATCATTTAGATACTCAGA

Function


GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU194880 lncRNA upstream 92930 24689795 ~ 24690175 (+) True G144014
TU194864 lncRNA upstream 180703 24557282 ~ 24602402 (+) False ppp3ca
TU194860 lncRNA upstream 354607 24428062 ~ 24428498 (+) True G144000
TU194830 lncRNA upstream 499955 24282034 ~ 24283150 (+) True G143973
TU194821 lncRNA upstream 593223 24189634 ~ 24189882 (+) True G143964
TU194906 lncRNA downstream 12878 24815864 ~ 24816084 (+) True G144038
TU194993 lncRNA downstream 47904 24850890 ~ 24851126 (+) True G144113
TU194996 lncRNA downstream 71328 24874314 ~ 24876737 (+) True LOC111188189
TU195027 lncRNA downstream 114700 24917686 ~ 24917987 (+) True G144125
TU195034 lncRNA downstream 132839 24935825 ~ 24936380 (+) True G144132
XM_007255726.3 mRNA upstream 1913 24769347 ~ 24781192 (+) True LOC103037427
XM_007255724.3 mRNA upstream 49332 24713729 ~ 24733773 (+) True LOC103036193
XM_007255727.3 mRNA upstream 78677 24693102 ~ 24704428 (+) True gps2
XM_007255731.3 mRNA upstream 93519 24686265 ~ 24689586 (+) True LOC103038819
XM_007255733.3 mRNA upstream 121998 24657413 ~ 24661107 (+) True ddit4l
XM_007255719.3 mRNA downstream 7991 24810977 ~ 24813754 (+) True LOC103035573
XM_022678252.1 mRNA downstream 53786 24856772 ~ 24874228 (+) False LOC111188189
XM_022678249.1 mRNA downstream 53786 24856772 ~ 24874228 (+) False LOC111188189
XM_022678250.1 mRNA downstream 53786 24856772 ~ 24874228 (+) False LOC111188189
XM_022678253.1 mRNA downstream 53786 24856772 ~ 24874227 (+) False LOC111188189
TU194884 other upstream 71572 24707083 ~ 24711533 (+) True G144017
TU194671 other upstream 867023 23827948 ~ 23916082 (+) True G143836
LOC111194174 other upstream 1376211 23403688 ~ 23406894 (+) True LOC111194174
TU194571 other upstream 1387865 23385168 ~ 23395240 (+) False LOC111194251
TU194997 other downstream 54020 24857006 ~ 24871749 (+) False LOC111188189
XR_002651001.1 other downstream 90006 24892992 ~ 24894553 (+) True LOC111194253
TU195051 other downstream 195787 24998773 ~ 25004171 (+) True G144146
TU195235 other downstream 573012 25375998 ~ 25378765 (+) True G144270
TU195258 other downstream 669137 25472123 ~ 25474694 (+) True G144290

Expression Profile