RNA id: XM_022678439.1


Basic Information

Item Value
RNA id XM_022678439.1
length 3445
RNA type mRNA
GC content 0.48
exon number 10
gene id dthd1
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34012482 ~ 34025373 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCATTTGTGTTGTGTTAATATATGCATGTAATTACTTGCAAATGTTAGTTTTAGATAATGCATGCGTGGCTAcgtaagtgtttgtgtgtgcgtaaTAGCGGACAGTAAAAGTGGAATGTCTGAAGAGGGCTGAATAGCTCCTTATTGTTCAGCCCAGCAGAGAAGCGGCcattcatacaaaaaaaaaagcacattacTCTTCTTTAGGGTCCTCAGTTGCTAAGGGCCCCTCGTTGTCTTCAGGCACACCCTTTATTGCCATGGCCACTCGTCTTTACACTGCCAGATTTGTAAATACTGCCAGGGCTGGACAAAGGCAGAAGCTAGCCCACAAACTGCACTACAGACCTACTGCACTACAGACCTAGAGCCAGATCAGAACCACAGACAGTCGCTGCTGGCAGGGTTAACTCACATTAACCGCATTAACAACTGCAGCTTGTGATCAAAAGGCCTTCTGACTGTCTgattcagaatgctgggggaaGATTTTGGATTTGGCTCAAGTCCTGAAGATAAACTTCTGAGCCTGCTGCAAGATACAACCCAGAAACTACAGGCACTGTTACACTCAGGAACAACCATAAGTGCAGAGGAACCTGGGCCTGAACTTGCGAAGGAAGACTCAGCAAGGCTTCTTAAGAAGCTTTTTCAGCTCTTTAAGGATTGGAGTGTGCTGCACACGCACAGGGTAAGACTCCTGAGGGAAGAACTGAACGTGacagcacacacactgacagagcaagagagaaaaccAAATACTATTGAAAGAGACTCTCAAATATCAACAAACATCGGCGTCTCCAGGGAGTCTAATCTTCACAAGCATGCCTACATCACTGACGTCATTCTGAACGTGCTGGAAGACGTGCAAAATATTGAGAAGAAACTGCATTCAGTCACAAGCAAACTTGAGAGAGCAATCAGTGTTCTCTCTAAAACTAAGCTAGACTTTAAGGAAGCTAGGCAAGACAACCTGGTCCTTCCACAAACATCTTCTGAACAGCCATGTGTTCCTCAAGAATTGATTCCAGATGATATTTCCACTGTATCACAGGAATGTGACCTTCAAACTACCCCAGACCCCAGAAAGAATAGACACCATGACTTAAGTGACTCATCTAATGAATGCAGAATTGTTCCTGTAAGAGGAGTAGATGCACAGAAAGAGAATAATGTTCAGAATGATAGTGAACTGGTAAAGAATGCAGGAACAGATGTCCACAAAGTTCACCTTGAGGCTGTTAATGATGGAGAGATGACTAAAGAACCAGTGGATGAAGTGATTGAAGAAAGAGGGAATATAGAGAAAAGTGATAAAGGAGGCAGACCACTAATGCAATCTTCTGATTGTGTGAGCCAGACACAAGACTTGGCAACAGTAAGTTTAACAGACTCAGGCAGTTCTTCCTCCAAACCGGTCTGCTACATCACCGGCCCAGTGAAAGTTGCAAAGCTCATCACCTGTAAGGTTGTGGATGGCCTCAGCTCCCTCATGGTGTCTGGATCAGAGGAGTTGGTGAGCAGCGTGCTCAGGATTGAAATCCCCAGCAGCACCAAAAGTCCCTTATTCCCATTATCCATAGCTATGCCTTTTCGAGCATCTTATCGTGGGAACTACCGTGAGGTCACGGTGAAGGTGGTGGACCAGGAACAGAGGGTCAGCTACGTCTCTCCTATAGCCACAGAAAGCAGCTATGAAGGTCACAGGGGTTCATTTGCAGTGGTGCGAGTTTACACCCTTGGTGTATTTGCAGTTGTGTCCCGTTTGCAGAGGGAGACTTTCACCATCCCAAAGAGAGGGATCTCTGTCAAGCTCACTGTGGATCCCAGAATATGCCTGGATTACTCGCCTGGATCTTTCACTACACCAGTTGTTGCCCAAGCAATGGTGCAGCCAGTAGATGCCATACTGCTGAATTCACTGAAGTCCTGGAATGATTCCTATCGCTCCATCCTCACCACTAGCCCTCTACTTTACCTCAATCACCCTTCAACCTTATCCTTCAGACGACCTGTGACCATAACCCTGCCCTGTCCTCCCAACCCTGACAAGAGGAAAACAGGAGAAGAtaacactccacaccacactcGTCCCAACAGCAAAGCACTTAGGCCTGATACTTTCCCACCCTGTCAAATCAGAGTTTTGAGTGCTTCACTCAAGTCATCCAGAGAGCTGTGTAAAGAGCAGCTGGCTGTATTGGGCTGGAGAGATGAGCAGTGGAATGTTCTTGATCAGATCAGTGTGAGGAACCTCCAGAATGGCCTGGTCTCTTTTGATCTAACGGACAACTGTGAGCGACTGATAGTCCTTCGTCTGCTCTCCTCGATAAGACCACCCTGCCTGACTTTCTTCGCTCAAGACCTGGAGGAGTCAGTAAGGACTTGTGCTGTAACTGTCGTCCTCCACACCAAGCGAGAGGACCCCAGCAATGCAATCCTGGCTGCCCATCCCAGCAGAGATCTGAGCTGGGCACTGAATGAATTTCGGGCCCAGGCTTATTTTGGGCCTCCAGAGCCCTCCACTGAGTTCTCCATGAGGGAGGGAGATCAGCTACTGCTGAAATTCAGCGGGAACATTACCAGTGCAGCAGGTGACCAGGGCACAGCgccacacacagtcacactccACATTCAGAGACGGAACTGGCTCTGCCTGAAGCTGAAGGAACAAGACCCATTTGGAAACTACAGCTCACCTCATTACAAAGGCACAGCCATTCTCTTCCGTATCCCCAGAGATCAGCTGGTCTGGAGAGGAGACCAAGCGGTCATATCTGAAGATTACAAATTAGAGGCACCAGTCTGCAAGCTGTCACTCACTCTCCCAAAGACTGTGAAAACTCTCAACAGACCAATGAGTGCAAAAGTCTTACGGCATGACCAGAGAGAGCTGCTGTGTGATGAGCTGTTAGCCTGGCTCTCGGGTGAGCTGTCTGAAGAGGATGCTGCATTACTGGTCATGTGTCTTCGCCTGCGCCGCTCAACCGTCCAGCTGGCCCGACTCCGAGCCCCGGACAGCCTCTCTCTGCAGACCTTCAACATCCTGTCCACCTGGAGGCGCAGCCTGCCCTCCTCTACACCAAAACGCCCTCTGCTGGCACGCTGTCTGACCCACATTGGCAGACCGGAGCTGGCTGCAGAGCTGCTGAGGAGAGGCCCAGCTGTGGATGAAGGGGAGAGGAAACATGTTGAACCATGGAGATTCAAAACACTGAGGAGATCCGTAACAAGCCATGGAACTTTAAGGCAATCCATCACATTGGAGTGAAGCAGGATTTGAAAAAGATGATAAAAACAGAATGTTCTGTGAAGGTAGCAACCCATGATAGTCCACTGACATTCATGTAAAGCAATGAGGTAGATAATtcagcaaaaacacacaaaaaaggcacaacaaatacagaaaagtctcattaaaaaaataaaacagagtaGCA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197880 lncRNA upstream 110183 33882808 ~ 33904289 (+) True G146243
TU197878 lncRNA upstream 156164 33851013 ~ 33858308 (+) True G146241
TU197872 lncRNA upstream 191271 33821431 ~ 33823201 (+) False G146237
TU197912 lncRNA downstream 3953 34029326 ~ 34065509 (+) True G146265
TU197914 lncRNA downstream 48951 34074324 ~ 34077890 (+) False LOC103033902
TU197915 lncRNA downstream 48951 34074324 ~ 34077890 (+) False LOC103033902
TU197916 lncRNA downstream 48951 34074324 ~ 34077890 (+) False LOC103033902
TU197919 lncRNA downstream 50831 34076204 ~ 34201199 (+) True G146269
XM_022678434.1 mRNA upstream 910243 32879690 ~ 33104229 (+) False pcdh7
XM_007242058.3 mRNA upstream 910243 32879691 ~ 33104229 (+) True pcdh7
XM_007242059.3 mRNA upstream 910243 32879691 ~ 33104229 (+) False pcdh7
XM_007242063.3 mRNA upstream 910243 32879693 ~ 33104229 (+) False pcdh7
XM_015603978.2 mRNA upstream 914158 32879693 ~ 33100314 (+) False pcdh7
XM_007242056.3 mRNA downstream 3077 34028450 ~ 34061967 (+) True LOC103033595
XM_007242057.3 mRNA downstream 42208 34067581 ~ 34077975 (+) True LOC103033902
XM_007242054.3 mRNA downstream 89768 34115141 ~ 34170245 (+) False LOC103032728
XM_007242053.3 mRNA downstream 89768 34115141 ~ 34164392 (+) True LOC103032728
XM_022678444.1 mRNA downstream 164261 34189634 ~ 34191960 (+) True LOC103039994
TU197717 other upstream 1401910 32612125 ~ 32612562 (+) True G146104
trnae-uuc_22 other upstream 1943046 32071355 ~ 32071426 (+) False trnae-uuc_22
TU197207 other upstream 2660028 31352296 ~ 31354444 (+) True G145748
TU197164 other upstream 2792138 31197218 ~ 31222334 (+) True G145711
TU197121 other upstream 2884449 31073973 ~ 31130023 (+) False LOC103044823
TU198225 other downstream 1374450 35399823 ~ 35402380 (+) False cct7
TU198654 other downstream 2466139 36491512 ~ 36494457 (+) True G146805
XR_454044.3 other downstream 2665320 36690693 ~ 36719287 (+) True acap1
TU198917 other downstream 3013609 37038982 ~ 37042227 (+) False c16h4orf48
TU199586 other downstream 4589505 38614878 ~ 38615355 (+) True G147496

Expression Profile