RNA id: XM_022678443.1


Basic Information

Item Value
RNA id XM_022678443.1
length 1903
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC111194385
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34102759 ~ 34109347 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTTGTGTGAGAACTGCTGGATTAAGAacataataaaagaaacaatgagaggtagaaagagaaaaTTTGTGAAACACAGATGCAATGAGAGATCTACAGCACCACCTAATGTACCCAAAAGGAAGAGAAGTGTGTCACCATCCAAGCAAAGGGAGAAAACAGCTCTCACAATGCTGTCATTGTTACCTGAAATGCTCGAGAAGATCCTCTTTAATCTCTCTGCAACGGATGTGGTTTCTTTTGGAGCCACTTGCCGTTATTTTCACGAGCTGAGCCTGAGCCAGGCAGTGTGGAAGAGACTGTACTGGAGGCAATTCATTGGCCCAGCTCTGAACAATAAAGACGTCAATTGGAGGAGGTTCACCATCCTAAAGATGAGCCAGGGCCTTGCCATGCAGCGCCTGAACAAAGGTGTGCGTCCTATTGGATTGCATCAGCAGCATGCCAGGGCTCGGCGGCCAACAGGGGTCCATCTGTTCAACAGTTCCCTGGCATTGGGCTTCCGTAGGGTGGAGGCCATACTTGAACAAACCCTGCTGTGGGACTACAATGGCACTATCTTTGCGCTCATCACCCCCATAGGAAGAGCGCCATGGTCAAGGCCATACAGCTACTCAGTACTGTGCTATCGAGCCATAGATTTTGCTGTGGACCCTCGCTGGAACCACAACCTCCGCCATTACATCTATGTGCTAACGCTGGGAGAGAGCAGTGGCAAACTTCCAGAGTCTGTGGGAAACCCAGGCTCTGTTGGTGACACTGTGGAGGTGTTCGAGTGGGACACCCATGAAAGAGTTTGTTATATTTCTTTCCACTCTACTATATTCTTCACACAGCTCAGACTGAGTGGGTCAGAGAACCGTCGCTTAATCCTGCTGCTGACAGATGATGGAATAGTATATTCAGCGCATTTAAATGAAACTATGTACAGCAGGAGGACCTCCTACACCACGGAGCTGACTCCAAAGACAGTTTCCTGTCAACTGCCAAACCTTCCAGTCAAACAGCTCCACACCAGTTCAAACAGCACTGTGTATATTAAAGCTGACGGCTCAGCTTTTGCAGAAGTGCATTCTCCAGGAGCGCTCCGCCAGCTGTTTGGGACTTATGAAGGTTTTAATCCCATTGGTGCTGAAATGGTTTACCCACTGCGTCTGCCATCCAGGgtgGTGAAATGCTCTCTGGGGCCTAACCACCTCTGTCTGCTGGATAACTGTGGAAGGATCTTCATGCAAGGCTGCAACCACCATGGCCAGTTAGGAACTGGAGACAAGATTGATCGTACCGAGCCCACtctgGTGATCATTCCCATGGCCCCAGTgaatgtgtggtgtgggctGAACCACACACTGGTTCTGCTGGAGGCTGAGTGTGGAGATAAGCAGGTGCACGGCTGTGGCTGTGGATCGCGGGGCCGATTACCAGGCCACTTGGGGGGCAGCTCTGTGTTTGTGAGGCTCAAAGTTCAaGTTCCACGCCACGCCTCATCTCTTTATTCCTCATCAGACTTTCTCTACATTATCTGCTGCCATGACATAACTGAACCCCCTGCACGTTTCTACATACCACCTGAAGTCACAGCTCTGAAGGATGCTgagaaaaaacagaaggaaGAGATTGAGAAACTGCACATGGACCTCACTCAAATGAAGAGATGTGTCAGTACCAAAAGGGGGATCAAGATGCTGCAGAGGGCTGTAAATGAACACATGACAGGCCTAAGTCCTGCCCACAAAGACTTCCTTGACTCAGCACTGTCCATAATCCTGCATGGGGAGAGCAGATCCACAGAGGAGCCAGAGCAGCAGCCTCATGCATAAACAGGACTGTCGAACAGTTTACTCTGTATGACCAGTACCTCTTTATTtcacataaagaataaaggtaCCTAGCAACATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197960 lncRNA downstream 10585 34017778 ~ 34092174 (-) True G146303
TU197982 lncRNA downstream 24806 34076949 ~ 34077953 (-) True G146324
TU197979 lncRNA downstream 37264 34061494 ~ 34065495 (-) True G146321
TU197894 lncRNA downstream 279238 33823015 ~ 33823521 (-) True G146254
TU197893 lncRNA downstream 279804 33822460 ~ 33822955 (-) True G146253
TU197993 lncRNA upstream 42467 34151814 ~ 34153483 (-) True G146331
TU198007 lncRNA upstream 70992 34180339 ~ 34187108 (-) True G146338
TU198095 lncRNA upstream 108391 34217738 ~ 34222837 (-) True G146390
TU198098 lncRNA upstream 108391 34217738 ~ 34222837 (-) False G146390
TU198099 lncRNA upstream 108391 34217738 ~ 34222837 (-) False G146390
XM_007242055.3 mRNA downstream 14155 34080254 ~ 34088604 (-) True paqr9
XM_022678436.1 mRNA downstream 101139 33833334 ~ 34001620 (-) True arap2
XM_022678437.1 mRNA downstream 101139 33833722 ~ 34001620 (-) False arap2
XM_022678335.1 mRNA downstream 2217350 31871057 ~ 31885409 (-) True cckar
XM_007248005.3 mRNA downstream 2386034 31709203 ~ 31716725 (-) True plaa
XM_007242048.3 mRNA upstream 120573 34229920 ~ 34371061 (-) False LOC103031173
XM_007242047.3 mRNA upstream 120573 34229920 ~ 34371059 (-) True LOC103031173
XM_022678438.1 mRNA upstream 120575 34229922 ~ 34376670 (-) False LOC103031173
XM_015603985.2 mRNA upstream 120575 34229922 ~ 34371058 (-) False LOC103031173
XM_007242046.3 mRNA upstream 323484 34432831 ~ 34458413 (-) True LOC103030854
XR_001518498.2 other downstream 317338 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 997172 33100297 ~ 33105587 (-) True G146175
trnae-uuc_21 other downstream 2045891 32056797 ~ 32056868 (-) True trnae-uuc_21
TU197580 other downstream 2221968 31872862 ~ 31880791 (-) False cckar
XR_002651049.1 other downstream 2544298 31550529 ~ 31558461 (-) False LOC103035326
TU198346 other upstream 1313618 35422965 ~ 35431920 (-) False hspa12b
TU198348 other upstream 1353850 35463197 ~ 35479194 (-) True G146584
TU198491 other upstream 1774262 35883609 ~ 35884321 (-) True G146686
XR_002651059.1 other upstream 3018068 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 3242731 37352078 ~ 37391735 (-) True G147092

Expression Profile