RNA id: XM_022678470.1


Basic Information

Item Value
RNA id XM_022678470.1
length 2518
RNA type mRNA
GC content 0.39
exon number 5
gene id tm4sf5
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36826363 ~ 36833257 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGATAGTAGAGCAGTAAATATGAACAAGTACCAAAGGGCATCCAGCAGTTACTTCCCTGCTGCTGTGCCTATCATTAGCTGGCACAATAACGACAGCATCACTGGGCTCTATAACTTAGCTCTACTTCTCTGCTTGATTTCATTTATCCTTTGGGAAGAGATTAACATCTACGCTGGTATTCGGTTTAAGGTTACTGTTAAACACTGACTCATTTAAAGCTGACTGAGGACATAAGACAgaagaacaacaaaacaaacatttgaGAAGATGTGTTGTACAGGAAAGTGTGCACGGTTAGTGGGACTGATCCTGCTGCCCTCAGCGTTTGTGTGTATGATAGCTAACTTGCTGCTGTTCTTCCCCGATGGCAAGCAGCTGGAGAAGAGTCAGATTTCTACACAGGTTTGGCTCATGGGAGGACTGATTGGTGGTGGACTGTTTATGCTGTGTCCAAGCTGTTCCGCAATCAGAGCTGGGGGCAAGGGTTGCTGCGGAAAAGGTTGCTGTGGGAACCGCTGCCGTATGCTGAACTCTGTGTTTTCCTCTGCGTTTGGACTGATTGGGGCAATATACGGAACCAGCGTTGCATCTGCTGGTCTGGCTATTGGACCTAAATGCCAAATGGCCGATGACAAATGGGGCTACCCGTTTGAGGATCTAGGGACAGGTAACAGCAGTTACTTGGTGAATAAATCAGTGTGGTCTCTCTGCGTGTACCCGGAGAATATAGTCCTTTGGCACATTGTTCTCTTCTCCATAATCTTGGGGCTGGGCATGGTGCAGGTGGTGCTCCTTGCTATCCAGGTCATCAATGGCTGCATGGGCTGCATCTGTGGGGACTGCAGAAGCAGCAAGGGGGAAGACGGAGGATTGTGAGCTGATGATACCATCAAACTTCTTTATTAATCCATGtatgcacattttatttatgctgtATGCACGTAAACTTTCACATACAGACAGAAGGCAACACTGTCTTGTTAATATACTTGATTTGCTACACGGATGCTGGTATTACTAGTAAGGCCACAAAATATGAGGTCTCTATATCTAACACAAAATGTAAGTTTGTAAAATGATTTTACAAATGATATCTGTACTTTGCCTTTGATTCAGCCAGAAGTCTATTTTTGTAGTTCATTTACTGACTAGTTGTCTGAATTCACCTTAACAATGtagaaatcagtgttttttttctgcacccTCTAAACAATAAAAGGTGATACAAAAGGAATTTTACAGTAATTCAATAGAAGAACAAcagttatttctattttattttatttctgttctatATTGTTAGTATGCGATTGCATTTTCAAAATGACAATTTGAAATAAGAAGGAACAACTTCTTTACAAGTTCAATGGAACATTTTTTATCACAAATTTATTTATGTGAATAGCAGCTGATAATACATAAATTAggtgagaaatgttttttttcatgatagTGATGATATGTTGTTTAGATCTGAcagaacataaaacaaacaatttattttttctgacagAATGATTACATAACAACTTAATGTCCAAAACACCTTCATGTAATTAGCTATTTATACTGCTgttatcattcattattaaaCTGGATAACATCAAAAGGGcttatgaattattaactaGATATGTGTAATACCTAAATttatctaaatataaaaaaacatcagaagAAGTTTTATTACAATGGTGAATGATGGAATCGCTACTGCAGCTGTTATTATAGGTTATATTAGTAAATGATTAAACTACAGAttatattttgtgattaatcaaCTGATTACAATCAGTAATCAAGTAAAATGTTTTGCCAAAAGGTCAGAGGACAAAAGCTGAACACGCAAATATCATGCAGAGCAAACAAATATCATGCAGAGATTTTCAAAGATTTTATAATACAAAGAAACCAAAAAAAGGTTGGACCCAGAAGGTACATGTGTGGGACTTATATGGGTAAAAATGGACAAGGTGAGTTCCAGATGGGCTCTGAGTGGAtctgaatttgttttattactgaacCCTGAAAGTTGTGTTTCCCAAATGGGCTGTTACGACCCCTGGTCATATTGGTTTTTCTTTGTATGCcctctgtgctgtttgtgtttggttTTTGGTTGTAGAACCATGATTGGCCACCGGGGGCGCACTCTATAAAAGGGCAGGGGGAAACCTGACTTGGAAGAGACGTTcagggctcctcccctttcctgACCTGGAACAACTTCCTGCTCAGACCAACCCAGCACCTCCATTTTGCATTCTGTgtgttgctttagtttttgcttcaATATACATTAGTCTTTGGGTAAAGTAGGGGGGTGGCTGTCATTTTGTTTTGCTacctttttctcctgttttggtGACAGGGAGTCAGGGTAGTTTgtgtatttagttttctttattttgcagttatttgtctttgtttgttcgttggttttattttttattttggcctATGCTCACTCCTGAAGTCATATTCCCCTAATTTTAtcaataaatttgatttaattca

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24920 TM4SF5; transmembrane 4 L6 family member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_454043.3 lncRNA downstream 12665 36800001 ~ 36813698 (-) True LOC103040824
TU198850 lncRNA downstream 12671 36800013 ~ 36813692 (-) False LOC103040824
TU198836 lncRNA downstream 106416 36718594 ~ 36719947 (-) False G146927
TU198835 lncRNA downstream 106476 36718557 ~ 36719887 (-) True G146927
TU198834 lncRNA downstream 106476 36718594 ~ 36719887 (-) False G146927
TU198998 lncRNA upstream 243072 37076329 ~ 37139272 (-) True G147046
TU198992 lncRNA upstream 348519 37181776 ~ 37246025 (-) False poln
TU199036 lncRNA upstream 401567 37234824 ~ 37235910 (-) True G147079
TU198990 lncRNA upstream 411817 37245074 ~ 37246025 (-) False poln
TU199046 lncRNA upstream 455902 37289159 ~ 37289403 (-) True G147089
XM_007243284.2 mRNA downstream 37398 36786579 ~ 36788965 (-) True LOC103044717
XM_007241988.3 mRNA downstream 73385 36744196 ~ 36752978 (-) True bcl6b
XM_007241993.3 mRNA downstream 85284 36724973 ~ 36741079 (-) False slc16a13
XM_007241992.3 mRNA downstream 85284 36724973 ~ 36741079 (-) True slc16a13
XM_007241998.3 mRNA downstream 139810 36666199 ~ 36686553 (-) False LOC103043480
XM_007233792.3 mRNA upstream 128322 36961579 ~ 36974436 (-) True LOC103036692
XM_022678472.1 mRNA upstream 128322 36961579 ~ 36969936 (-) False LOC103036692
XM_007233791.3 mRNA upstream 141278 36974535 ~ 37005758 (-) True LOC103036398
XM_007233794.3 mRNA upstream 194263 37027520 ~ 37037575 (-) True nelfa
XM_022678473.1 mRNA upstream 195046 37028303 ~ 37034930 (-) False nelfa
TU198491 other downstream 942042 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 1347169 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 1394443 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 3040942 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 3720776 33100297 ~ 33105587 (-) True G146175
XR_002651059.1 other upstream 294158 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 518821 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 675404 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 890135 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 1072508 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile