RNA id: XM_022678490.1


Basic Information

Item Value
RNA id XM_022678490.1
length 1901
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC103042927
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37466834 ~ 37489535 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGATGTGATGAGAGGAGCACCAGCTGCTCTTTAAAGACCTGCAGACAGTGACGTTTGGAGGAGTTACCAGTCTTGGGTGAATCGTTCCAGGTCTTAAAGTGAAGAAATGGCAGAATCTTCAAAATCTCCATCACACCAGCCAATCAGGAAAAGAGAGAGTATAGAAGAACCACTGACGTTTGGTTGTGAGTCCAGCAGTCCTCTGTCTGAAGGTCAGTTCCAGTGTTCTATCTGTCTGGACGTGTTCACTGATCCAGTTTCTACTCCATGTGGACACAACTTCTGTAAATCCTGCCTCACTCAGCACTGGAACAGCACTCAGCACTGTCACTGTCCTTTATGTAAAGAGAAATTCACCAAGAGACCTGAACTGAAGATCAATACAACACTGATAGAGTTGGTGGAgcactttaaaaagaaatgtgttCTAGATAAAACTGAGGTTCTCTGTGGCGTCTGCACTGGAGAGAAGCTAAAGGCCTTCAAGTCCTGTCTGAATTGTGCAGCAACGTTCTGTAAGACTCATCTGGATCCTCATTGTACTGTTTCACTATATAAGGAACATAAACTAATCGATCCAGTGGAGAACCTGGAGGATTACATCTGCCAGAAGCATGAAAGACCCCTGGAACTGTTCTGTAGAGATGATCAGACGTGTGTGTGTCAGTTCTGCACTGAGGGAGATCATAAAAATCACAACACTGTTCCTATAGATCAGACACAGCTGGAAAAGATGCACACAGAGATGCAGCCAATGATCCAAGACAGAATTAAGAAAATTGAAGAGATTAAACGATCACTGGAGCTCAGAAAAagaaacacagagaaggaGATTTCAGACAGTGTTGAAGTCTTCACTGCTCTGATGCGCTCCATTGAGAGAAGCCAGGCTGAGCtgcttgaggtgatggaggagaaGCAGAAAGCAGCAGAGAGGCAGGCTGAAGAGTTCATTAAAGATCTGGAGCAGGAAATCACTGAGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgagGATCACCTCCACCTCCTACAGATTTATCTCTCCATGAGTCGCCGACCACTGATCAACAACTGGACTGATATCAGTATAGACCCTCCTTTGAGATTAGAGCCACTAAGGAACGCTCTGTCTCAACTTCAGAAGAGCCTGAacgagaaaaagacagagacagaactGAAGAGGATGAGGCAGTATGCAGtggaTGTGACTCTGGATCCTGATACAGCATCTCCTTATCTGATCCTGTCAGAAGAGGGAAAACAAGTGAGATTTGGAGACACGAAACAGAATCTTCCTGACAACCCAGAGAGAATTAATCCAGCTTCTTGTGTTCTGGGAAAGGAGGGATTCTCCTCAGGGAGATTTTACTATGAGGTGCAGGTGAACAGGAAGACTGACTGGGATTTAGGAGTGGCCAGAGAGTCCATAAACAGGAAGGGCATGATTAAACTGAGCCCACAGAATGGATTCTGGACTGTGTGGCTGAGGAATGGGAATGAGTATGAGGCTTGTGCTGGACCTGgggtccctctctctctgagagAGAATCTCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGGAGGCCAGGTCCCATATCTACTCTTTCACTGGTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGCCCAGGTCCACATTTCGGAGGTAAAGATGCAGTTCCACTGACCATTTTACCTGTTATTAAAACTGAATGAATTCACAGCTCACCTTATTTACTGTTCtgtaaaaatgtcaaaaactcTCACATATTCAATGAAACACATTCACTGTACTTTTGTTCAGAATCACAATTTTAGTAtatgaataaaacactgaaaacacagtaaaaagc

Function

GO: NA

KEGG:

id description
K10651 TRIM21, SSA1; tripartite motif-containing protein 21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651065.1 lncRNA downstream 5642 37455012 ~ 37461192 (-) False LOC111194395
XR_002651064.1 lncRNA downstream 5642 37456575 ~ 37461192 (-) False LOC111194395
TU199286 lncRNA downstream 5695 37456996 ~ 37461139 (-) False LOC111194395
TU199287 lncRNA downstream 5695 37456996 ~ 37461139 (-) False LOC111194395
TU199288 lncRNA downstream 7660 37456996 ~ 37459174 (-) True LOC111194395
TU199289 lncRNA upstream 28538 37518073 ~ 37519166 (-) True G147293
TU199313 lncRNA upstream 60714 37550249 ~ 37596991 (-) False G147312
TU199319 lncRNA upstream 73272 37562807 ~ 37565202 (-) True G147314
TU199312 lncRNA upstream 92092 37581627 ~ 37596991 (-) True G147312
TU199329 lncRNA upstream 94728 37584263 ~ 37601397 (-) True G147321
XM_022678339.1 mRNA downstream 582 37461195 ~ 37466252 (-) True LOC103039127
XM_022678487.1 mRNA downstream 43693 37246071 ~ 37423141 (-) False svep1
XM_022678486.1 mRNA downstream 43694 37246071 ~ 37423140 (-) False svep1
XM_022678489.1 mRNA downstream 43694 37246071 ~ 37423140 (-) False svep1
XM_022678488.1 mRNA downstream 43695 37246071 ~ 37423139 (-) False svep1
XM_007233803.3 mRNA upstream 32698 37522233 ~ 37525107 (-) True LOC103040682
XM_022678343.1 mRNA upstream 172141 37661676 ~ 37672030 (-) True LOC111194362
XM_022678503.1 mRNA upstream 185319 37674854 ~ 37685722 (-) False lrp10
XM_007250221.2 mRNA upstream 185319 37674854 ~ 37685722 (-) True lrp10
XM_022678502.1 mRNA upstream 185319 37674854 ~ 37685569 (-) False lrp10
TU199053 other downstream 75099 37352078 ~ 37391735 (-) True G147092
XR_002651059.1 other downstream 274334 37127415 ~ 37192500 (-) False poln
TU198491 other downstream 1582513 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 1987640 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 2034914 35422965 ~ 35431920 (-) False hspa12b
TU199299 other upstream 19126 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 233857 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 416230 37905765 ~ 37910873 (-) False LOC103047699
XR_002651067.1 other upstream 1524467 39014002 ~ 39017632 (-) True LOC103039602
TU199785 other upstream 1540463 39029998 ~ 39034183 (-) True LOC103028345

Expression Profile