RNA id: XM_022678533.1


Basic Information

Item Value
RNA id XM_022678533.1
length 5963
RNA type mRNA
GC content 0.47
exon number 30
gene id LOC103028971
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38153822 ~ 38296144 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgtgtgtgtgcgagcgcGCGACAGTGCGCGAGAGAGAGCCTCTCAGCTTTTCCTCCCGTCCGGCCGTACAGGAGCTGGAGCgcgcgagcgagcgagcgagcgacgGATAAACAAGCGCGTTCAGCACGAGCGAGACACGGCGCCGCACAGAGAAGCCTCGTGCCCGTGAGTAGGAGGAGACGGTGCTGAAGCCCCGGTGGGTCCTCCATGGCCTCCAAGCTGAACCCCAACGTGCTGTATGTGCGTGAGCCAAACAGTGGTGCTGGGGACGCGGGAGATGAGTCCTCAGACAGTGACGGTGAACCGGAGGAGACCTGCCATAAGCTCATCCGGAAGGTGTCCACTTCCGGTCAGATCCGCGCCAAGaaGAGTGTGAAGGAGGGTCTTCTGTTGAAGCAGACAAGCTCCTTTCAGAGATGGAAGAGAAGGTACTTCAAGTTAAGAGGCCGGACTCTCTACTATGCCAAAGATTCAAAGTCACTTATATTTGATGAAGTGGATCTTTCTGATGCCAGTGTGGCGGAAACCAGCACGAAGAACATCAACAACAGCTTCACAgtgATCACTCCATTCCGGAAGCTGATGTTATGTGCGGAGAGCAGGAAGGAGATGGAGGATTGGATCGGCGCTCTGAAGTCTGTACAGAAATGGGAGACATACGAGGCCAGCCAATTTAACATGGAACATTTCTCTGGGATGCATAACTGGTATGCCTGTTCCCACGCTCGTCCCACCTTCTGCAACGTCTGCAGGGAGGCGCTGCCTGGGGTCACGTCACACGGCCTGTCCTGCGAAGtgtgcaAATTTAAAGCCCATAAACGCTGTGCCGTCCGATCCACTAACAACTGTAAGTGGACCACTCTGGCATCCATAGGGAATGACATCATAGAGGATGAAGATGGGGTGTCCATGCCCCATCAGTGGCTGGAGGGGAACCTGCCAGTCAGTGCGAAGTGTGTGGTTTGTGATCGGAACTGTGGCAGTGTGCGCAGACTGCAGGATTGGCGCTGCCTGTGGTGCAAAGCCATCgTGCACAGTAGCTGCAGGGAGCAGTTGGGAAAAACTTGTCCACTGGGTCAGTGTAAAGTGTCCATCATCCCTCCCACCGCTCTCAACAGCATTGACTCTGATGGTTTCTGGAAGGCTACCAGTCCGTCCTGTACCAGTCCTCTGCTGGTACTGGTGAACAGTAAGAGTGGAGATAATCAGGGAGTGAAGTTTCTTCGCAAGTTTAAACAGCTGCTCAACCCAGCGCAGGTCTTTGACCTTATGAATGGAGGACCACAGCTGGGacTGCGACTCTTCCAGAAGTTTGAGACATTCCGTATCCTGGtgtgtggtggtgatggcagTGTGGGCTGGGTGCTGTCAGAACTGGATAAACTGGGACTGCACAAACAGtgtcAGTTGGGAGTGCTGCCTCTGGGTACGGGTAATGACCTGGCGCGGGTGCTGGGTTGGGGTGGGCTGTGTGACGATGACGCTCAACTGCTGCAGATACTGGAGAAACTGGAGAGAGCTACAACCAAGATGCTGGatagaTGGAGTATAACGACATACGAAGTTCCCACCAAGAATACTCCTGTAATTGTTAAGGAGGATGATCCACTGGACTCTCCACTCCAGATTACTCACTATGCCGACTCTGTTGCCACCCATCTGACGAAGATCCTTGACTCAGACAAGCACAGTGATGTCATATCCTCTGCTAAGTTTTTGTGTGGGACAGTGAATGACTTTGTGGCTGAGGTTGGTAAAGCCTATGAGAGAGCTACAGAGAATAAGGAGGAGGCGGATGCAATGGCTAAAAAGTGTGCGATGCTGAATGAAAAGCTGGACTCTCTGGTGCGGGCCCTGAGCGAAGAAGCCGATGCTCAGCTGGTGCCCGCCGGTTCCCAGTCGCCGGAGCAGGAGGGTGAGGAGAGCGGCTCCGACGCTCCGGGGGTCCTCAGACCTTTCAGATCCAGAGAGCAGCTGATGCTGAGAGCAAACAGCCTGAAGAAAGCCCTCCGGCAGATCATAGAGCAAGCGGAGAAAGTGGTAGATGAGCAGAACAGGCACACGCAGGTCCAGAGGATGTCTTCCTGCTCGTCAATCAAAAGAGGAAGCAGCGAGGACCTCAAAGAGGCGGAGCCACGTCAAAGTGCCATCAGTCCCACCTCCACTGGCCccatagtgctggagaaaccaGACAGCTGCAACAGCGCCATTTCTTTTACTGAGGAATCTGTGCAGTGCACAGAGAAGTGTGTGATGAATAACTACTTTGGGATCGGCCTGGATGCCAAAATCTCTCTGGAGTTCAACAACAAGAGGGACGAGCACCCGAAGAAGTGCAGCAGCCGCACGAAAAACATGATGTGGTACGGTGTACTGGGGACTAAAGAGCTGGTCCAGAAAACCTACAAGAACCTGGAGCAGAGAGTGCAACTGGAGtgtgatGGAGTGCCCATGTCCTTACCCAGTCTTCAGGGTCTGGCTGTGTTGAACATCCCTAGCTATGCAGGTGGCATCAACTTCTGGGGAGGAACCAAAGAAGATAACAATTTTGGAGCTCCGTCGTTTGATGATAAGAAGCTGGAGGTGGTGGCGGTGTTTGGGAGCATGCAGATGGCCATGTCTCGCGTCATTAACATACAGCATCACCGCATTGCCCAGTGTCGACAGGTGAAGATCATCATTAAGGGTGATGAGGGAGTTCCTGTGCAGGTGGACGGGGAAGCTTGGATTCAGCCACCCGGCATTGTTCAGATCATCCACAAAAACCGCGCCCAGATGCTCACCAGAGACCGGGCGTTTGAGAGCACGCTGAAATCGTGGGAGGATAAGAGGAAGTATGACAGCTGTCGCTCCTCCCGACCGCGCCTCAACTCCCAGCAGTCCATGGAGTACCTGACCGAGGAGGAGTGCGCTCAGGTCCAACAGCTCGGCCTGGTGGCTGATTCACTCATCAACAGgataaGGGAGGCTGCTAAGACTCATAAGGTGGTTGAGCAGGAGTTGGCTCATGCTGTGAATGCCAGCGCTGCTGTTCTGTCTGAGGCTTTTCCCTCCAAACCCTCCAGCCCTGAGcagtgcCTGAGTCGCAGCACGGCGGTGGAGATCGTGAACAGCAGTAAAGTGCTTCAGCTGGAGACCAGGATGCTTTTAGAAGGAAAGTTACTGcaGCTGGAGGCTCCTCAGGAAGAAGAGCTCCTCTCCACCCTCAACTCTCTCAGCGCTGAATTAATCAAACTGGAGGACATCCACTGGATCTGCCCCAGCATGCACTGTTCCGAGGAGGACTCCTCCCGGACCAGTGCTAAGAGCAGTATGAAGCTGAAGATCATGCCCAAAgtgaagaaggagagagagaagctccACAAGCAGCGCTCCAACAGCTCTCTCTCAGTGGAGAGATGGGGTGCGGAGGAGGTGGGCGCATGGCTGGATTCGCTGGGGTTAGGGGAATACAGGGAGAGGTTTGTGGCCCGGGACATCCAGGGCTGGCAGCTGACTCAGCTCCAGAGACAAGATCTGAAGgAACTTGGGATATCAAAAGTGGGGCATGTGAAACGGATCCTGCAGGCAATTGAAGAGCTGGAGGGTCTTCTGTAGTGTCCCGGTGCTGTCGGACACACTTCGCCACAGGAAGCTGCCTTTCATTGAGGAAGAAATGTTTGGagctataaaacacacacacacacacacacacacacacttacacaaacaaacacacacattcttctGTGAGTGGGCACAGACGTGAGAGGCATCACACTGAAAGGCATCACATTGTGATGCAACGACATATCTTGTCCTGTTCGCTGCCTGCTGGCAGTTTTGGCGATGCTGATTGACAGACATTGGGTGTAAACTACAACTCCCACAATCCTTTTCTTCTCATCTGGCTTTCCTTTCCATCGGTTCCTGTTTCTTGTGTGAGTTCACGTGGTTCCCCCTCCATGCATgaaagttttttatatttttttctccttttctttctttaaaactttttcttctttttacctTTATTGACGCGTTCGAAGCCATGAGAAACAAACTGGACTGATTTGttcttttaaaagaaatagaaaaaagggaaaacattattttttctgtttgctGGCATTCGAACAATGCTAAAGGAACAAACCCAATCTCTGTATGTGTATGATCTACCACAGTGGACATTCTTAACAAGAAGTGCAAAAAAAAGCATCTTGAATGTATTGTGGACCTGTATTACCTGTCCGAATCGGCAGAGCTGCATAGTAGCTACTTCTGTCTGTATCTATTCAAAGACAGTCGATGTTTCTCTGCATGCCTTTCGAGCCCACGATCCTTGAGCAGAAAAAACAAAAGCCGCAGGACttcttctcttttattattttcctggttttgtttttacttttctcTTTGGTCGTCTGCGAAGTTGTGCTGTTGTACCACTCGTGTGCCAGGTGAGCTGTTGTTCTAGAAGCTTTCAGTGACGTAAACTTGTGCCAAGTTTCCTCGAcacgttttttttctctgaggAATCTCCTGAGGGGGGCTAATCACACGGTGTCGTACATTTCATGATGTGTTTTATCTTATTGCCTTGCACTTTAAAGAGGAGTAACAGTCTTTCGGAAGCAAACTTGAAAGTCGTGTATTGTAAATTTTTATCATATTAGTAAAAGTGTATCCCTATTTATGGCAAATCTATTGATAAATGTGTGATACAGGAATAATATATTGTCAGACTTTAATGAACATTATACCCATGTCTCTATTTACAGGGTTGGATTGCGTAATCTTGCATAAGGTTTGAATAGTTCCATATAATAACATTATATGATCTGTGTGTGGAAATGAATCAATTTCTTATACTGAATGaggaggacttttattttgaagttgtCTAAGGTACGGCTCACAGTCAGCCTTTTATTGATACATGACTGCACAGTTCTGTCTGAGTGGGATAAACAGAGCTGCTATAAAAtatgaaggtaaaaaaaaaaaacatatttagagaCATTAAACATTTCCATTCCATcaagttttaaataaattgtttcgtcaattaagtaaataattaacTCAATTTAACCTCAATTTAATCTGTTTCAACAATTTAACGAAGCACGCTCTCagtttaataatacatttttcctaatttaataaaaacatcctttcatttaacattttgttttctcCTTCCCTCATTTTAGCAATCCGTTCCATCAGTACATGAGTTAAACTGAGGCACCAATTTATTAATCTGATTCTCcgtgttatttaaatgttatttttttacctcCATACTTCAGTGTCTCTGTAGGGATGGAGCGCTACAGTGACAGTTCTCAAAATCAACAGAAATAAAGACAGGAAGCAGAAAGAACACCTGCATTGGTAGTTATGGGCTATGATGTCATGAGGtagttatttttctttaaacaaaagaaggaaaaacagcATTGTAAACTTACAACATTTACTGGACACTTAAGTGAAAGGCTGGACTGTGATATGTACGTGTGCTTGTATGAAGACTCTTGCTGTTTGTTATACGGTTGTGATCAAAGTCTActgtttgctaaaaaaaaaaacacaaaaaaaacaacactgttccCCTCATCTCCTAAAAGTGTCAAACTATTGTTCTAGTGTTAGCCGAGGtacacgataaaaaaaaaaaaggaaaaccttGATTTCTTATAAAAGTGGCACCAAAAAGAGGCCGTTCCACCTTTTTTTGGTTATCCATTTTACAGCAAAGGCAAGACTACTgcttactgtttattgtttactcTTACTgaagtttattatttatcatttttgaattatttaaaattcttattttttgtgcCATATGGGTTGCAGTCCAGCTTCCATGGCTCTAGGTCCGTCCTTTGGCTGCTAACACCTCTACTTCAGGattgttgctgttttatttGAAGCGAAAATAAAGTGTGGCCATCGCTA

Function

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199474 lncRNA downstream 21944 38125654 ~ 38131878 (-) False G147405
TU199477 lncRNA downstream 30837 38093512 ~ 38122985 (-) True G147407
TU199466 lncRNA downstream 112151 38041452 ~ 38041671 (-) True G147397
TU199459 lncRNA downstream 131317 38022055 ~ 38022505 (-) True G147390
TU199452 lncRNA downstream 144799 38003479 ~ 38009023 (-) True G147386
TU199568 lncRNA upstream 100011 38396155 ~ 38396864 (-) True G147478
TU199592 lncRNA upstream 320659 38616803 ~ 38617057 (-) True G147500
TU199595 lncRNA upstream 322007 38618151 ~ 38618698 (-) True G147503
TU199598 lncRNA upstream 332256 38628400 ~ 38629110 (-) True G147506
TU199607 lncRNA upstream 343164 38639308 ~ 38681678 (-) True G147514
XM_007250197.3 mRNA downstream 126418 38015582 ~ 38027404 (-) True LOC103045353
XM_007250199.3 mRNA downstream 157340 37987447 ~ 37996482 (-) True syt4
XM_007250200.3 mRNA downstream 184744 37944839 ~ 37969078 (-) True LOC103046269
XM_022678519.1 mRNA downstream 184881 37944839 ~ 37968941 (-) False LOC103046269
XM_007250205.3 mRNA downstream 243654 37904892 ~ 37910168 (-) True LOC103047699
XM_022678538.1 mRNA upstream 56594 38352738 ~ 38403259 (-) False LOC103028652
XM_022678540.1 mRNA upstream 56594 38352738 ~ 38403259 (-) False LOC103028652
XM_022678537.1 mRNA upstream 56594 38352738 ~ 38403259 (-) True LOC103028652
XM_022678539.1 mRNA upstream 56594 38352738 ~ 38385182 (-) False LOC103028652
XM_022678541.1 mRNA upstream 112700 38408844 ~ 38609892 (-) False LOC103044140
TU199421 other downstream 242949 37905765 ~ 37910873 (-) False LOC103047699
TU199360 other downstream 427063 37723392 ~ 37726759 (-) False mrpl52
TU199299 other downstream 639370 37508661 ~ 37514452 (-) True G147302
TU199053 other downstream 762087 37352078 ~ 37391735 (-) True G147092
XR_002651059.1 other downstream 961322 37127415 ~ 37192500 (-) False poln
XR_002651067.1 other upstream 717858 39014002 ~ 39017632 (-) True LOC103039602
TU199785 other upstream 733854 39029998 ~ 39034183 (-) True LOC103028345
TU199801 other upstream 803954 39100098 ~ 39104914 (-) True G147652
TU199804 other upstream 815110 39111254 ~ 39113616 (-) False LOC103036951
TU199810 other upstream 821166 39117310 ~ 39123788 (-) False LOC103036465

Expression Profile