RNA id: XM_022678541.1


Basic Information

Item Value
RNA id XM_022678541.1
length 2842
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC103044140
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38408844 ~ 38609892 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctgctctgcgcTCTGCTCTGCGCTGCGCTGAGCACATCACGGAGTCTCGCGCACCGGACGCGTTTGAGCGCTGTGGAGGAATCCGAGAGGTGGGACGACAACAgaacacaaagacagaggacAGAAAGAGCACGCGCAGGTGATCAGACCATGTGAGGAGGGTCTGGAGGCGCGCGAGAACAGCCACAGCAGCGAGACAGACCACCGGTCCTAATGGacTGTTGGAGGAAACGGGAGCCGCCTGAGGAAACCCACACGGACATGAtgtggagaacatggaaactccacccagatagagacttgaacccaagaccccggTGCTGAGAGATATTTCCTCCAATACCTCCAAGACTGCAAGGACAAGAGCACCAAATGGACACAATGGATATCCTCTATTCTGTAGACTTTACCTTCACATAGCATAACCAGTGGATCATTCAAAACACAGGAGCCCTACCAGGACTTTGAAGCACCCATTCACCCATTGTTGGTAAGGGTGAGCCCGCTAGTGGCCTGCAGAAAGAACTGTAGCTACTCTAATGATGGGGGCTCCTGGAGGACCGGTTCTGGGTGGCTTTGGGTCCACCACTGCCTCGTTAGACATCGCTGGATGGATGATCTCACCTGGAAACACAACCATAAGCCTGAACCAGAGCCTGTCCTCGCTCGATCTAGCTGCCAACATCTCCGCTTCCTCAGCATCCACTCAGGCTGAAGACAAGGACAAGATAGAAAAGAATTGGCCAGCGCTGCTCATACTGGTGATTATCCTGCTGACCATAGGAGGGAACATTCTGGTCATCCTGGCCGTGTCCCTGGAAAAGAAGCTGCAGAACGCAACAAACTTCTTTCTGCGATCTCTGGCCGTGGCGGACATGTTGGTTGGCATCCTGGTTATGCCCATCTCCCTCATCAACATCCTGTACGACTATGCCTGGCCTCTGCCTAATGCCCTGTGTCCAATCTGGATCTACCTGGACGTGCTCTTCTCCACAGCCTCCATCATGCACCTGTGCGCCATCTCTCTGGACCGATACGTGGCCATCTGCAATCCCATCCAGCACAGCCGCTTCAACTCACGCACCAAAGCCATGCTGAAAATCGCCGCTGTCTGGACCATCTCTATAGgcATCTCCATGCCCATCCCGGTGATCGGCCTTAGCAACGAGGATAAAGTCTTTGTGAACCACAGTTGTGTTCTGAATGAGGAGCGCTTCGTGCTTGTTGGCTCCTTTGTGGCCTTCTTCATCCCTCTGGTCATCATGGTGGTCACCTACTGCCTCACGGTGCAGGCCCTCCAACGCCAGGCGTCCGTCTTCCTCTATGAGACCAAGGCATCTTCCCAGCAGCCCTTGCAGCCCACAGGCCCATCCTCTTCCCAGCTGGCTCCTCCCCTTGCCCCATCGCGCCGCAGCAGCCTGAACTGCCTTCGTCTGGGGGGAGGGGACGGAAACTCTTTGAGCCCCGCCACGCTTTCGGACAGCGTCTCGATCGTGGGCAGTTCGGAAGCCCCGTCTCAGCTTAACTCACCTGTGGGTCGAGACCCCACCGGGGCCCACGGCCGCCGTGGCATGATGCAGGCCATCAAGAATGAGCGGCGGGCCTCTAAAGTCCTGGGTGTGGTGTTCTTTCTGTTCTTGCTTATGTGGTGCCCGTTCTTCATCACCAATGTGCTGTTTGTGCTGTGCCGCGGGGCATGCAATGAACCCCTGCTGAATGAACTGCTCAATGTATTCGTGTGGATTGGATATATCTCCTCAGGGGTCAACCCTCTGGTTTACACACTTTTTAATAAGACCTACAGACGGGCTTTCTCCAGCTACATGCGCTGCCGGTACGGCGGAGTGCGGCTCAAACCCATTCCCATCTATTCCCAGCCCTGCCCCTCCCATGCTGCAGTTACTCCCCTCCTAATCTGTGGGAAGGTGGGAGTGGACCGGAACAGTAACTGCCGGAATGGGGACGGGAATGGCTTTGGGAATCTGGAGGCTACGGACATAGACATGGATGCTGGGTTGGAACTACGACCTGGAATGTCAGCGTTGTCCGTCAACAGCTGCCACGCACTTCCAGAACACACAAGCAGCGTTTGAATGGCTTCAAACCCATGAATCTGGAGCAGGGTCCTCCAGTTTAGCCCTTAGGACTTTGGACTTGTGTTTTGCCAATTCCCTCGGGGTGTGTCTGCATCCTTCTTGTTGCATCACTCAAACAAGGAACTGCCCACAACCCTTGGGAACTCACACCAGCATTGGGATTGGCTTTCGTCACTACCACTAGGTGTGACACGGTCTTTCTAGAATGTACGCTGGTAGGCACCGACTCAAAGCACCACAGACTAACCCTGGTTCGAATGCGTCAGAGCACTTCCAGGACGCTCAGCACTGTGCAGGAATGAATAAGGAGTACAAAATATACAAGCCAGTTTTCTGGACATGGATTAGGCCTAGTCTCAGACTGAAATGTAACATCAGTGGTTGAGTAGATGTTCTTGATTAGCAATTTCAGTCTCAGCTTAAGCCTAATTTTGGTCTGAGAAACTGGTGCTACATGTGAAATCAACAAGTACACATTTCTTAAtggaactgtgtgtgtgaacaggttCAGATATCTGAAATgccaaataatttattgtgttgcaTGGCTTATTCCGGTTTCCCAGTTACACCTAGTCAAACAGTGCGACCTGCTGAACATGCAGGAAGGCTTCCAATCAGAGAGTATACAGTGCCCTCATGTGGTCCATTGCAGAAGTCTGGTTGCAGGTGGCTTGTGAGATGAAGAGCTAAAAAAAAGGTGGCTGACCTACattatatgaagaaaaaaaaaaaaaatatata

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007626 locomotory behavior biological_process
GO:0007631 feeding behavior biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199568 lncRNA downstream 11980 38396155 ~ 38396864 (-) True G147478
TU199506 lncRNA downstream 180866 38227511 ~ 38227978 (-) True G147427
TU199475 lncRNA downstream 195485 38125654 ~ 38213359 (-) True G147405
TU199474 lncRNA downstream 276966 38125654 ~ 38131878 (-) False G147405
TU199477 lncRNA downstream 285859 38093512 ~ 38122985 (-) True G147407
TU199592 lncRNA upstream 6911 38616803 ~ 38617057 (-) True G147500
TU199595 lncRNA upstream 8259 38618151 ~ 38618698 (-) True G147503
TU199598 lncRNA upstream 18508 38628400 ~ 38629110 (-) True G147506
TU199607 lncRNA upstream 29416 38639308 ~ 38681678 (-) True G147514
XR_002650995.1 lncRNA upstream 137926 38747818 ~ 38751357 (-) True LOC111194220
XM_022678538.1 mRNA downstream 5585 38352738 ~ 38403259 (-) False LOC103028652
XM_022678540.1 mRNA downstream 5585 38352738 ~ 38403259 (-) False LOC103028652
XM_022678537.1 mRNA downstream 5585 38352738 ~ 38403259 (-) True LOC103028652
XM_022678539.1 mRNA downstream 23662 38352738 ~ 38385182 (-) False LOC103028652
XM_022678533.1 mRNA downstream 112700 38153822 ~ 38296144 (-) False LOC103028971
XM_007250190.3 mRNA upstream 218785 38828677 ~ 38845998 (-) False LOC103043213
XM_007250192.2 mRNA upstream 218785 38828677 ~ 38845996 (-) False LOC103043213
XM_007250189.2 mRNA upstream 218785 38828677 ~ 38845909 (-) True LOC103043213
XM_007250191.3 mRNA upstream 218785 38828677 ~ 38845903 (-) False LOC103043213
XM_007250187.3 mRNA upstream 317634 38927526 ~ 38961503 (-) True LOC103041964
TU199421 other downstream 497971 37905765 ~ 37910873 (-) False LOC103047699
TU199360 other downstream 682085 37723392 ~ 37726759 (-) False mrpl52
TU199299 other downstream 894392 37508661 ~ 37514452 (-) True G147302
TU199053 other downstream 1017109 37352078 ~ 37391735 (-) True G147092
XR_002651059.1 other downstream 1216344 37127415 ~ 37192500 (-) False poln
XR_002651067.1 other upstream 404110 39014002 ~ 39017632 (-) True LOC103039602
TU199785 other upstream 420106 39029998 ~ 39034183 (-) True LOC103028345
TU199801 other upstream 490206 39100098 ~ 39104914 (-) True G147652
TU199804 other upstream 501362 39111254 ~ 39113616 (-) False LOC103036951
TU199810 other upstream 507418 39117310 ~ 39123788 (-) False LOC103036465

Expression Profile