RNA id: XM_022678544.1


Basic Information

Item Value
RNA id XM_022678544.1
length 4236
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC103042589
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38963738 ~ 38983217 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTGCATCTCCCTCAGTCGTCCTCTGTGTGTCACAGCGGGTCCGGCATCCTTCTGCTGCTGACTGTCTGACACACCTCTTAACCCCCTTAAAACGCTTAAATTCCCCCTTAAAACCCGAACTAACAGCCTAAAGACACAGCCGCCGCCATGCCGAAGCCCCTGACGGACCAGGAGAAGAGGAAGCAGATCTCGGTGCGCGGCCTGGCTGGGGTGGAAAACGTCGCCGACCTCAAGACCAATTTCAACCGCCACCTGCACTTCACCCTGGTAAAGGACCGCAATGTGGCCACCAAGCGGGACTACTACTTCGCCCTGGCGCACACGGTCCGCGACCACCTGGTGGGCAGATGGATCCGGACGCAGCAGCACTACTACGAGACCGACCCCAAACGTGTATACTACCTCTCTCTGGAGTTCTATATGGGCCGCACTCTGCAGAACACTATGGTGAATCTGGCCCTGGAGAATGCATGCGATGAAGCCACCTACCAGCTGGGTTTGGatatggaggagctgcaggaCATCGAGGAGGATGCTGGACTGGGAAATGGAGGCCTGGGCCGTTTGGCAGCTTGCTTCCTTGATTCTATGGCATCTCTGGGCCTGGCAGCATATGGGTATGGCATTCGTTATGAGTTCGGAATCTTCAACCAGAAAATTGTGAATGGCTGGCAGATAGAGGAGGCAGATGATTGGCTGCGCTATGGCAACCCATGGGAGAAGGCCCGGCCTGAGTACATGCGCCCTGTGCACTTCTATGGTCGTGTTGAGCATCATCCTGATGGAGTAAAATGGGTGGACACACAgGTGGTGTTGGCTTTGCCATATGATACCCCGGTGCCTGGATACAGGAACAACATCGTGAACACCATGAGACTGTGGTCTGCTAAGGCCCCCTGTGAATTTAACCTCAAAGACTTTAATGTTGGTGGCTACATCCAGGCTGTGTTGGACAGAAATCTGGCAGAGAATATCTCTCGCGTGCTTTACCCTAATGACAATTTCTTTGAGGGGAAAGAGCTGCGTCTGAAACAGGAGTATTTTGTGGTGGCTGCAACTCTTCAAGACATTATCCGACGTTTCAAAGCCTCCAAGTTCGGCTCGACGGAGGTGGTACGCATGGACCTGGACAAGTTACCTGACAAGGTGGCTATCCAGCTGAATGACACACATCCGGCCATGGCCATCCCAGAGCTGATGAGGATTCTGTTGGATGAGGAGAAACTGACCTGGGAGAAGGCGTGGGACATCACAGTGCGTACCTGTGCCTACACGAACCACACAGTGCTGCCAGAGGCTCTGGAGCGCTGGCCTGTTGACCTGTTCCAAAACCTCCTGCCCCGCCACCTGGAGATCATCTATGAGATCAACCGGCGCCACCTGGAGCGTATCTCCTCTCTGTACCCTGGTGACAGTGACCGTATGAGGCGCATGTCTCTGATTGAGGAAGGAGGGCAGAAAAAGATCAATATGGCTCACCTCTGCATCGTCGGCTCTCATGCTGTGAACGGAGTGGCCCGCATCCACTCTGATATCATCAAAAACACAGTGTTTAAGGACTTTTATGAAGTGGACCCCCAGAAGTTCCAGAATAAGACCAATGGCATCACCCCTCGCCGCTGGCTGGTCATGTGCAACCCAGGCCTAGCTGAGGTCATCGCTGATAGGATTGGTGAGGACTACATCCGTGATCTGGGTCAGCTGAAGAAACTCCTGAAGTTTGTGGACGATGATGCCTTCATCCGAGATGTTGCCAAGATCAAACAGGAGAATAAGATGAAGTTTGCTGTGCATTTGGAAGAGCATTACAAGGTCAAAATCAACCCCAACTCCATGTTTGACATTCAAGTAAAGAGGATCCACGAGTACAAGAGGCAGCTGCTGAATTGCCTGCACATCATCACCTTCTACAACCGAATCAAGAAGGAGCCCAACAAAGCCTGGACCCCCAGGACAATCATGATTGGAGGAAAGGCTGCCCCTGGATACCACATGGCTAAGATGATCATCAGACTCATCACAGCTATTGGAGAGATAGTGAACAACGACCCAGTAGTGGGAGACCGCCTTAAAGTCATCTTCTTGGAGAACTACCGCGTAACGCTGGCTGAGAAAGCCGTCCCTGCTGCCGACCTTTCTGAGCAGATCTCCACTGCAGGAACAGAAGCTTCTGGAACTGGAAATATGAAGTTCATGCTGAATGGCGCTCTGACAATTGGCACCATGGATGGAGCCAACGTGGAGATGGCAGAAGAGGCTGGAGAGAATAACCTCTTTATCTTTGGCATGAGAGTGGACGATGTTGAGGCCATGGATAAGAAGGGGTACGATGCTCATGAATACTACAACCGTATTCCAGAGCTGAAGCAGGCCATTGATCAGATTTCTGGAGGATTCTTCAGCCCCGGTCAGCCAGATCAATTCAAGGACGTCGTCAACATGCTAATGAATCACGACAGgttCAAAGTGTTTGCTGACTATGAAGACTACATCAAATGTCAGGAGAAAGTCAGTGCACTGTACAAGAACTCCAAGGAATGGACCAAGATGGTGATCCACAACATAGCCGGGTGTGGCAAGTTCTCCAGTGACCGTACCATCTCCCAGTATGCCCGCGAGATCTGGGGCGTGGAACCAAGTTTGGAGAAGATTGGTGCCCCAGATGACCCTCGCTAAACGAGGGTCTAGCCAGCATGCAGGAGCTCCATATGCTAGAGCCATTCTCACATTCAGTTCATTTCTCCCTTGTGAAGATGTGTCGCTCATTGGTGGTTCTGTTAATGTTCGATTATGTAAGAATTGTCCCTCTAGGGGGCAGCCAAGGTACCTCACACCACCTGGTTCACTCAAAATTAATGTTCTGCTCTCTGTGGTgtgtttaaacatatatttgtgtgtctatgtgtgtgtgggaatgGCGTTTTTTGCTCATGCTAACTGGTACAGCCCTAATGAACCAAACCCGTCTCATGCCAGGTTCACAGGTTCACTACACAGCTTTCAGAGTTGTCTGTATTTCACACTCAAATCACAAGATGTGATGATATTAAAGCTGCTAGATATTTTTGGGGGACTTGGGAGGCATCAGCAAGTCAGCAGTCAACACCAAACAAACGCTAGTTTGCCTTCATCCTGAGACGTTTGTCAGCAATCTCCAAAACCAGTTTGAGACTTGAGAATTGGGGCTAAAATGTGAATCATGAACCTGGCATAAGAAGATGAACCAAAATCCCTGTTTACCAACAGTTTTACTCATACATCAAAGTACAGGTAGAAAGCCAGTTTTTTAGTGTGATATGCTGTGTTGTAATGTTACCTATGTCTTCCTATTAAGaacaacagaaacagagaaagttGGCCAGTTATGAAGAACTAAGATTGACAAATACATACTCATACACTGTGATAAGAGGTCTAGCACTGAAGGTTTACTATTATCAGTCTCTCATATCCGTCCACATTAATGATTGCTACAGGCATGGACTCACTTTGTTGTgcgtgttttaatgtgtttgacatttgatttttttacagACTATGTTTTTCCACGAGTATTGATGTTGCAAACAGTATCAACCTGTTGTGTCTCTCAACTAATCCACGTCCTAAGATACTGCCttctctcctccacctcctctacAATTACAAATGCTGCcttagtgtgtgtgagcgtgcaAGCATGCAGGTTTGTGTGTGCTTGCGTATGTGTGTTCAAATGTGAGAGAGCTTGTTGATCACCATCAGCAACTTCCTCCCATTCTTCCTGGTTCTCAGGAAAACGTGGTCCAGATAGTCACACACACCCAGTAAACGGCTATTAATCTGACCCTCTCTCCGATAGACTAATGCATTCACAGTCAAGTAAGTTATAGCTAAAATAGCAGAGATATAACTGCAGAGGTTGCTTAAAGTGTGTGTAGAGAAGTGTTACCGCTGAAGTGtgaagtgtgtagtgttatacaCTGTCTGTAGATGCTGAGTCAAGATTGACCAAAAGATCACTGTAgttgaaatatattaatattatttagaaCAGATTAGTAAAGAGAGTTATACTAAGCTATATGAAATACAGCTGTAGGCCTCAGTGGTGGCCCCTCAGATCTATAAATCAGTTCTATGAATGTTactgttatgtgtgtgtggttgctgACCAGTACCACAGCACAGTCTGACTGCTCTAATTGAACaccaatgaataaataaataaagattataaaatatatCCATATTA

Function

GO: NA

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199756 lncRNA downstream 36939 38926385 ~ 38926799 (-) True G147629
XR_002650995.1 lncRNA downstream 212381 38747818 ~ 38751357 (-) True LOC111194220
TU199607 lncRNA downstream 282060 38639308 ~ 38681678 (-) True G147514
TU199598 lncRNA downstream 334628 38628400 ~ 38629110 (-) True G147506
TU199595 lncRNA downstream 345040 38618151 ~ 38618698 (-) True G147503
TU199774 lncRNA upstream 23770 39006987 ~ 39012368 (-) False LOC103040134
TU199779 lncRNA upstream 39796 39023013 ~ 39025717 (-) True G147637
TU199761 lncRNA upstream 58401 39041618 ~ 39050382 (-) False LOC103038564
TU199797 lncRNA upstream 95083 39078300 ~ 39102214 (-) True G147649
TU199790 lncRNA upstream 155804 39139021 ~ 39141977 (-) True G147643
XM_007250187.3 mRNA downstream 2235 38927526 ~ 38961503 (-) True LOC103041964
XM_007250190.3 mRNA downstream 117740 38828677 ~ 38845998 (-) False LOC103043213
XM_007250192.2 mRNA downstream 117742 38828677 ~ 38845996 (-) False LOC103043213
XM_007250189.2 mRNA downstream 117829 38828677 ~ 38845909 (-) True LOC103043213
XM_007250191.3 mRNA downstream 117835 38828677 ~ 38845903 (-) False LOC103043213
XM_022678546.1 mRNA upstream 2795 38986012 ~ 38997741 (-) True sf1
XM_007250183.3 mRNA upstream 16878 39000095 ~ 39006229 (-) True LOC103040853
XM_007250182.3 mRNA upstream 23769 39006986 ~ 39012417 (-) False LOC103040134
XM_007250181.3 mRNA upstream 23769 39006986 ~ 39012378 (-) False LOC103040134
XM_022678548.1 mRNA upstream 23769 39006986 ~ 39012277 (-) False LOC103040134
TU199421 other downstream 1052865 37905765 ~ 37910873 (-) False LOC103047699
TU199360 other downstream 1236979 37723392 ~ 37726759 (-) False mrpl52
TU199299 other downstream 1449286 37508661 ~ 37514452 (-) True G147302
TU199053 other downstream 1572003 37352078 ~ 37391735 (-) True G147092
XR_002651059.1 other downstream 1771238 37127415 ~ 37192500 (-) False poln
XR_002651067.1 other upstream 30785 39014002 ~ 39017632 (-) True LOC103039602
TU199785 other upstream 46781 39029998 ~ 39034183 (-) True LOC103028345
TU199801 other upstream 116881 39100098 ~ 39104914 (-) True G147652
TU199804 other upstream 128037 39111254 ~ 39113616 (-) False LOC103036951
TU199810 other upstream 134093 39117310 ~ 39123788 (-) False LOC103036465

Expression Profile