RNA id: XM_022678551.1


Basic Information

Item Value
RNA id XM_022678551.1
length 6599
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC103028039
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39467363 ~ 39484662 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCTGATCTCGTTAAAATACTACTAATCCCAGGATTCTCGGAGGTGGCCCGTGATTTCCGCGGTCGGTGTTGCCGGGGGGAAGCGTGCGCCGGGACTGGAGTTGGGAATGACGGGAGCCGAAGCTGCTGGACTCCACACCACattcctccaccaccaccaccataacAACACCACCAGCGGCGGGGCGTAACACACAAGGCTTCGGGCAGACGGAGCGAGTTGGTGGACAGGGCGCAGAAACGGGCAGTTTAATAATAATCCACTGTTTggatcagtctgtgtgtgtgttcgctgGCTCCATGCTCTTGCCCCACACCTGCTAGCGAGGCGGCTAATCCGAGCTGCTCGAGCAGAGCTGAGGAATGTGACTCTCCCGCTACAGAAACAGAAGCAGCTAACGGTTGTGCTGATGGAGACACTGATGAGCGCTGTGGCTCCTCGGCCAGCTGCCCCGGTGAAGCGTGTTGCGGAGGTGGACTTCCGCTCGGGCACCACGCTGGAGCAGCTGGCAGCGCAGGTGCAGGAGCTTGTTCTGCTGGAGCAGGGAGAGTTCGGGGACCAAACTGCACTTGAGGTGCACACTGCCAAAGACTTCATTTTCAACATGCTCGGCCTGGTACAGAAGGTGGACAAGAGGCTTCCAGTGGCAAACGAATATCTGCTGTTGTCTGGAGGTGCCAGGGAAGGTGTTTTAGACCTGAACCCTGAGGACCTGGGTGACTACGCTCGAGGCGTGGACTTTGACCTGGACTTCACCCTGCTCGTGCCAGCTCTCAAATTGCATGACCGCAACCAGCCTGTAACTCTGGACATGCGCCAGTCGCCGCCATGCCACTCTTGGCTCAGCCTACGTCTTTGTGACCCCACCATGCTGGCACGATGGGGCATCTGCTGCGAGGACGAGGCTAACGGACAGCGCGAGGAAGACGATGATGTGGAGGAAGAAGGTGGCTCTATACTGGGGTCGATTCCATCCCTGCAGTCTCCCCAGTCTTTGGATGGATGCTACTTCTCACCCTTGCTGGTCACTGATTGGTTCTGGAATGTGGTTGGGACAGCAGTGGAAGAACTTAGACGGAATCCTCAGAGAGGTATTCCGGTGCCAGATCGCATTGAAAGAAACGGACCTTTGACCACTCTAATCCTCAAAGCAGGTACCAGCCGTGTGCTCTACGACCTTCTGCCCGTTGTGTCATTTCGTGGCTGGCCAGCAGTTGCACAAAGCTGGCTCACCACCAACCACTTCTGGGATGGAAAGATCACAGAGGAGGAAGCCATTAGTGGGTTTTATCTGCTGCCTTGCTGCTCCCCGGCTGCAGGGTCTGCCTCTAGACCTGACCGAGAGTGGAGGTTGGCCTTTTCCCGGAGTGAGGTCCAGCTGAAGAAATGTGTGCCCTACCCTATGGCTGCAGCGTTCCAGGCTGCCAAGGCTGTGCTGTCCAGATTGCTTGCGCGTCCACGTACAGGCCTTAGCCTTTACCACCTCCGCACACTGCTTTTCTGGGCTTGCGACCGCTTACCTGCAGCCTACCTGAGCTGCCCTGATCAAGAGACGCCTGCTCGCCTGCTCCTGGGGCTCCTAGATGACCTATCCCACTGTGTGTTGGGTAAAAACTGCCCAAACTATTTCCTCCCTCAATACAACATGCTAGAGCACCTTACTGATGGTGCTGCCCTGCTGGTAGCTCGGAAGCTAGCGCACTTGCGCTCTGATCCAGCCGAACACTTGCGTGCAGCCTTGGAGCAAGCCAGACAGGCCTGCCAGCTGAAGCGAGAAGCTGCCGGAACAAGTAACGGGCATGGTGTTTCATCacccagccgcgggtcctcaGCCGCAGGCTCACCCCAAGATGACCGGCTAGCACAGAGGCTTCAGCAGCTAGTCACAGAAAACCCTGGCAAGTCCATTTCGGTCTTCCTCAACCCTGATGATGTCACGAGACCACACTTCCGCATTGACGATAAGTTTTACTAAGACGACGCTGTGGCGGCTTGTGCTGAGAGCCAGCCACATAGCCAGTGATAAAGCTAATGGTTAAAGCTGAGAGCACACGCACACTCATCCACTGTGCATTGAACTGTACTGTATCTAAATGAAAAGAACCCCAAAAAGCAGGCTGGgcataatcagtgatggtttttttttttttttttctgccagcGATACAATCTGTAAGCCAGCTCTGCAAAATATGATTAAGCTGCTGCTACAGAGACCATCTGACCCAAATCACGTCCTCTGTCAGCTACGGGGctctgctaccaaaaaaaaatgaaaagaaaataaccAAACGGAGGAAGAGACAAGAGCAGCTGTCAGAGGACTGGAACAATATTTAAGTCTTGTATGCTGTTTGATGGGTGGCCTTGGCGCTCACTTGCTCAGTGAAAAGAGTCTATTGCTCAGTGAAACCTTATTTACTCCTGCAAACAAACTGCTATGAGTCATAACATCTCGCACAAGCTGACTTATTCTGTAAAACAGTACTGCAGTTGAGAGGTTCTGACACGTGCTACTTACTACTgagatgtgtgtttttgtttgtttgttttgtactCTTTGATTATTCTATTTGATTATTCCTGGAAAGCAAGAGCATGAGTGAAAAGATATGAAATGATCTAAAAGCTGGTACATTtgatgtaaatgaatgtaatttttgctgtttgtttttgaaAGGTTCTGAAAGTTTAGCACTGGATATAATTCATTTGATTTCTATACTTAATCTCTCTCTTATTCgtcttattctctttctcagGTACTTTTTTTGTTGCTCAAGTTGTTTTTTACTGCTACATGATGATGGCATTTCCAGTGTTTATGGTATTGCCTGTGTGCCTCCCACTATTTCAAACAATTTGTCAGTTGACCCAAAACATTTTGGTCAAGGGGCTGCTTTTGGTTTAGAAAGCTATGTGACTTAATGTCTAGTTAATGAAGGCTAGGCTGGGAATTGCACTTGTGTTCATTCATAAAGCATTTCATAATGCAACACAAGCACAAACTGCATTCTAAGAATTGCTGCAAGGGGTGCTAAAGCGAAAGCCAAGTTGTCTTGTATCACTGGCATGCTTTTTCCAGTCAACTATCATGATTGTAACCCTGTCCATTACCCCTGTCTATGATTTGTCCTTGTCGCTCTCCTAAGTGCTGAGTGTTGTACCCACCACAGTAATGTCGGAATGGACGTTGAGTTTTGATATTTGATAGTCTACAGAGCCAAAAACCACATGAAATCTGGTGGTTTAAAATGTGACAAGATGCGTCTCGGTGTGAATGGTCAAATCAAAATTTTTCAGCACTCACAACTTAAACAGCAGTCTCATCAACTCCAGAGGGACAGAAGGGTGAAGGTCCAAAAAAAGCACCAAAGGTTGGTTACTGATGCCAATTACTTGACTGTATAGCAGCCCATGCAGATCTCTTTTGTTATATCCACACACATATCCAACCTGGTCACTCAACAGACCTAGTCGTCTCAACAGACCTAATTTGAGAAACAGATAtgatttgcctgcagtctgatCACGGCCTTTGTGCAGCAGGGCCGTGCATTTGTCGAGTGTTGGCCTGGCATTGCCATTTGCAATTTTGTGCATGCTTTGAGTCTGTTTTGGGCCTTAAAATGATGGAGTCTCTTCAGTGCACTGCTCCAACAAGCCATGCCCTCTGGCTGAACTGTACATCTGATTAAGATCAGCCATGGGCCTGAATATGAAGCACCCAAACCTCAGGTCAGTTTTTTACAGCAGGATCAGGACCTGCTGCATTACTGCTGAGAATCATGTACATATTTAAGTACCTGACACCATATAGACGCACTATAATGACAAAAATGCTACAAAGTACGCCCTGTCATTTCcatcaaaaaaacaaagatgaaGAAATGGTACAAAGTCGCAAAGTTTCTAAGGATTCTTCCTGCAGTGCTAACATATATCTCATATATCTGAGTTGCTAATGTGTAATATGATTGTTTACGATATTGAATATGTTTCAGACTGATTTTAGCTGCTTTCAGTTTGGTGCTTGGttatataaaagttatataaaagAAATGCAGCATTTCTCAGACGCTACATAATAAAAGCTCGTCCCAAAGTGAAGGGACCTTCATGTACAGCCAAGAAAGGCTCGATTTCAAGGCTGCGACTGATGCATCTTTCGCAGCCATCAGTTTCCCATAGTTTTCTGTGCacatacaagaaaaaaaaacaccaacaccGAAATGGCGtgaggtaaatgtgttttttttatatagaatcACATGATTCTTTGTCAAGAAATCAAAAACAAACAGGTGCAACATAATTAATTTTCCTTGCACTGCAGTTGCAGGACTAAGGATCTTTCTTGTGACATCACCACACAACCCAATGTCATTAGACTGTTCTGTATGTGTGACCAATAGTCTGCTGAGAAGAAGTCTTAATAGGACAGACCTACAGAGAACCTGCCCTACTTTGGCTGCACCCTAGGCTATGAAATGCGGCTTATATgtgcaaatattgatttcattcGCTTCCATGGTTTGGTGtgtgcgggagagagagagtgcaataCAGCAATTCCTGTTAATATACTTCTGTATCAAACTGTGCTTCATAAAGCTTGTTAAAGGCTGGCTTGTTTTGTTGAACTCTGGGAAGGTTTTTGGCCAACTGTTTGTGGTCACTGGAGAGATTCAAGGatggctgaagaaaaaagagagaaagaaagacagaaaaacgtgtgtagaaagaaaaagaaacgcAGAACCAAAATAGTGTCATAAGAAGCATCTTCAGAGAAACTGTCTGTGTTGCTTGTGTGTTGGTTCCTATCTTTCTCCCACAGATGTGCAATGGtgagatggagggatgaatggatagagggagagagagccagCAGCGGTCTCCATTGGCAGATTAGTCAGAACGGATGGAGCTCCTGGGAGTGCAGGCagctggttctctctctctctttctctctctcttattctcctcctctctctggaTCTGTCTGTGTCTACCTCTCTCTGTGTCTAATttatcctttttctctctctttcatccatctctccctccctctctccatccaaGAATGAACTCATTTCCCTGGGTGTGAATGAGTTCCACGCACTCTATCTAACCCACAAACATTCTTTTCCTCTGCAAATGTATGCAGTAAGCAGAGCAGTCAGGCTCAGATAAGGCCTTTATTTGTGTAAAAGATGTCGTACTGTAAAATGGGCTGAGAcagttctatttttattttatttgtaatcattttttttttctgaaattgctGTAAGTTAGGCTTGAAATGTAAAGGGGTACTACTGAATATAATGAACGTACTGAACATAAAGAAGGTACAGATAGTTTGGTCATGAGCACACGGTACCATCATACACTAGAAACAGACATCATATCTAATGTCTTGCGGAAATTAAGCCAAAGTGTGAGTTTATACTCAAAGTGGAGGTGGCCAAtatgataaaaacaaatattgtatcacaatatttaaagacatttttaagatGCATAATattgaatgtgtttttcttgCTTAGTTAGTACAAAAAGATATATATTCAAAATGTGTGTCGCTTCCTCCAGTTCTTTAAGCGCTGAAAGTATCTTAAAATTTATATCATTATAACAACTTGCGACACAATACAATACGATGCAATAAAATATCGTCATATTGCCCATCTctaatgcagcagctagtgtaagtAGCTCTCGGTTAGTAGATGCAGAATGGAATGGAATAGAATGGATGAATGCTTTGTTAACGTACGCATACGCTTGCCACTGGGTACCTTAAGTAGCCTGTTTTAATGGGCCTGAatcatgtaaaatgttttaaccGATATTTATATAATCTTTGGAACagtaatatatatctatatctatatgtgTGTTCTCTTCATTGATTAAGATCGTTGTACCGCACAATGCCTAATATTAGATGAACAATCGTACTATGCAATTTTACCATTATCTATCAAGAGCCTATCTGTTTCAGTGAGATATTAGCCCTCTGCCCTGTTTGAGGTAATTACCGAGAGCATTTCATATGGAGGAAAATGATTTCAGTGGCGAAAATCAATGCGTTTCTGCCTCAGGGGATAACAGGACATTCTAATGGCCGCATTTTTCGATGTGATAACTTTATAAAAACCAAAGCATAGTCATTACTCTCCTGACAGTctgttgcagtgtttttaaagctaaattatcCCCACATTGCACGGTAGTAATGCTATCGCAGGCAGTCAGGCAGGCCCCAGGCCCTTATTAAAGTGACGGTACAGAGCTGTTTTGTAGTTGTTGTGTAATTGAATGAGTAATGATAATgaatgtaaacatgttttacCTCTGAAGCGAAGCATATCTGAATGAACCCAGATCTAAAACTACATGGAATTGTGCAGTGACCTAAAAAGGACTTTATATCCCATCATTTTCTCATGCCAGATATTTTTGTgcatcttttgttttttttttctggttgattttgttttattatttatatctccAATCATGTGCGATGATGTCGGTCGTGGcatgaaataaaacactgtcattaaaaaaatgtctccCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199865 lncRNA downstream 79256 39382713 ~ 39388107 (-) True G147700
TU199866 lncRNA downstream 79256 39382713 ~ 39388107 (-) False G147700
TU199862 lncRNA downstream 144020 39322591 ~ 39323343 (-) True G147698
TU199855 lncRNA downstream 202191 39262825 ~ 39265172 (-) True G147693
TU199852 lncRNA downstream 206711 39259897 ~ 39260652 (-) True G147691
TU199887 lncRNA upstream 4708 39489370 ~ 39490191 (-) True G147714
TU199983 lncRNA upstream 287320 39771982 ~ 39776934 (-) True G147807
TU200066 lncRNA upstream 403527 39888189 ~ 39893258 (-) False G147869
TU200072 lncRNA upstream 403527 39888189 ~ 39893258 (-) True G147869
TU200073 lncRNA upstream 403527 39888189 ~ 39893258 (-) False G147869
XM_007250162.3 mRNA downstream 69369 39275642 ~ 39397994 (-) False fgf11
XM_007250163.2 mRNA downstream 223082 39198862 ~ 39244281 (-) True chrnb1
XM_022678550.1 mRNA downstream 272164 39172624 ~ 39195199 (-) False LOC103034907
XM_022678549.1 mRNA downstream 273968 39157149 ~ 39193395 (-) False LOC103034907
XM_007250164.3 mRNA downstream 273968 39172624 ~ 39193395 (-) True LOC103034907
XM_007250161.3 mRNA upstream 5899 39490561 ~ 39498234 (-) True tmem256
XM_007250157.3 mRNA upstream 331245 39815907 ~ 39817763 (-) True ufsp1
XM_007250154.3 mRNA upstream 361228 39845890 ~ 39848520 (-) True pop7
XM_022678559.1 mRNA upstream 1300850 40785512 ~ 40792759 (-) True ankrd53
XM_022678558.1 mRNA upstream 1300850 40785512 ~ 40792733 (-) False ankrd53
TU199853 other downstream 69351 39265349 ~ 39398012 (-) True fgf11
TU199810 other downstream 343575 39117310 ~ 39123788 (-) False LOC103036465
TU199804 other downstream 353747 39111254 ~ 39113616 (-) False LOC103036951
TU199801 other downstream 362449 39100098 ~ 39104914 (-) True G147652
TU199785 other downstream 433180 39029998 ~ 39034183 (-) True LOC103028345
TU199886 other upstream 7000 39491662 ~ 39498214 (-) False tmem256
TU200005 other upstream 332056 39816718 ~ 39817600 (-) False ufsp1
TU200007 other upstream 336089 39820751 ~ 39821575 (-) True G147828
trnan-guu_3 other upstream 1126877 40611539 ~ 40611612 (-) True trnan-guu_3
trnan-guu_4 other upstream 1127296 40611958 ~ 40612031 (-) True trnan-guu_4

Expression Profile