RNA id: XM_022678559.1


Basic Information

Item Value
RNA id XM_022678559.1
length 1880
RNA type mRNA
GC content 0.48
exon number 6
gene id ankrd53
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40785512 ~ 40792759 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACATTAGTGGCTCTATTGTGGAGAGTTGCCAGGCAACAGAGAAATCCGTCAACAGACAGTTCATGGCAGAGGCTGGTGGGACTCGTCGTAAGGTGCGCTGGCTGCAGAGAGCGCCGCCCGCAGGTGATTTATTCCAGGCCGCGGTGTCCGGAGATCAGGAATGGCTGAGCTTCAGTCTGAGGAGAACACTCTCACCCTCACAGCCCAACAAACAGggtCTCACAGTGCTCCATGTGGCTGCTCAGCATGGCCGGCTCGACTGCGTAAAGCTGCTTGTGGAGGCTTACTGTGTTGATGTGAACGCTAGCTGTCCGTGTGGGCGGAGACCCCTGCACATGGTGCTCAGTCCACAGAGCAAACCCCACTCACACACCTGCATTATATACCTGCTGCAGCACGGAGCCCAGCACAACGTATCCACAGATGAAGGACTGACCCCTCTGCATATGGCTGCAGCTGAAGGCCTGAAAAACTGTGTTGAAACGCTGGTTGAGGTTGGAGCAGACACACATGCCATTGACAAACACGGACACACACCACTCGACCTCGCTCGCTTATGGGGTCACAGGGTCATTGCCAGGTTTCTAAAGAATGCCATGTGGCAGAGAGATAAGAAGAAAGAAATGGAGGAACGTAAAGCTCTGCAGAATCTCCGGCACAATCTGATGTGGCTGTACAGGACTGCAGAGAGCAAGGAAAAGGTGACCAGAGAGGCGGTTAATGTGCAGAAGGTCACTGAGTGGGCTGAGAAGAAAGGGCTTCCTTTGCTCTGGCCTCCTCTCAGGAGCTCAGGAGCTTTAAACCATAGCTGCTTCCCATCCACTGAGCCTCCGATTACAAAGAGCAAAAAGAAATTCAAGGAAAGTTCACCCACACCAATGTGGGACATCTCTCCAAACCCCTGTAGACCTCCTCCAGCCAGTGTCAGCAGACCACAGGAGGTACGAATGGGAGTCCATCCAGAGAAAGCTCCACTAGAGCCAGATCTACGTAATAGAGTGACTTTGAGTTGTTTTGAGGATGGCCGCATCCACTACACTGCATCATGGGAGAACATTCCACAGTCAGTTCCTGCCCTGCCCATGGATGTCATCCAAAGAGGCCTGTTTCCATCTGCTTTTCCCTCCCGTATCACTTCTCCACTGCCCTTCCAGACCAGCAGCATGCTGGACCTGCCTCATCGAGGTTGTACTGCCAAACCAGGAGACTCACCTTGGACTGAGGTGGCGATGCACCTCGCAGAAGAGCTGGAACTGGGCCATTACTAAATGATAAATGACTAGTTTTGATATTTTTTCCTTGTGCAGACTGCTTGCATTCAAATAACCTTATAATATTGAacaatcataatatatgatgtCATCCTCTCTCCTCAACGCTTTTTACTTGCTCCAGactgttttttaattgaatcttatttttttccccacccacacatacgtTCCTAGCACCTGTGGCGAGCTGTGTGGGATGTTaacaaaatataccaaaatatacatCAAGTTACAGTCAGGTCCAGCATATATGCCAGTTGCTTTTCTGTTCATACACAGACAAGTCTAGCCATTTCTTCACATTTCTAGCAGGGTTGTACAAAATTTAAATTGGAATTCCATGAAATTCATAATCCATAATTAAGCATATAACAATGAAGCTttacagtatgtattacatatgatTTTTCAGTCTCTCTTTGCTGGATTTCAAtttctctgctgagaaatgTTGGACACGTGCAGATAGCTGTGCCCCTAAAATAACAACCTGCCAAAGTctgagcacacctggctcttaaagtgaatggcaagtgacacgctcaTTGTGTTATTGCATGTAACATCCAAAAACAAACCCATGAATAAATAAGAGAATCAGTACA

Function

GO: NA

KEGG:

id description
K21441 ANKRD53; ankyrin repeat domain-containing protein 53

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200362 lncRNA downstream 3511 40772650 ~ 40782001 (-) True G148077
TU200333 lncRNA downstream 92863 40675959 ~ 40692649 (-) True G148056
TU200335 lncRNA downstream 142105 40643146 ~ 40643407 (-) True G148058
TU200334 lncRNA downstream 143517 40634329 ~ 40641995 (-) True G148057
TU200328 lncRNA downstream 155825 40629471 ~ 40629687 (-) True G148052
TU200377 lncRNA upstream 38636 40831395 ~ 40831664 (-) True G148088
TU200435 lncRNA upstream 82668 40875427 ~ 40876486 (-) True G148120
XR_002651073.1 lncRNA upstream 141641 40934400 ~ 40935933 (-) True LOC111194403
XR_002651074.1 lncRNA upstream 155768 40948527 ~ 40950045 (-) True LOC111194404
TU200511 lncRNA upstream 196463 40989222 ~ 40989474 (-) True G148173
XM_007250154.3 mRNA downstream 936992 39845890 ~ 39848520 (-) True pop7
XM_007250157.3 mRNA downstream 967749 39815907 ~ 39817763 (-) True ufsp1
XM_007250161.3 mRNA downstream 1287278 39490561 ~ 39498234 (-) True tmem256
XM_022678551.1 mRNA downstream 1300850 39467363 ~ 39484662 (-) True LOC103028039
XM_007250162.3 mRNA downstream 1387518 39275642 ~ 39397994 (-) False fgf11
XM_015602604.2 mRNA upstream 31322 40824081 ~ 40833786 (-) True LOC103041524
XM_022678345.1 mRNA upstream 116098 40908857 ~ 40909862 (-) True LOC111194366
XM_022678347.1 mRNA upstream 227569 41020328 ~ 41023008 (-) True LOC111194367
XM_022678568.1 mRNA upstream 234367 41027126 ~ 41031436 (-) True LOC103042841
trnas-gcu_3 other downstream 29471 40755960 ~ 40756041 (-) True trnas-gcu_3
trnak-cuu_8 other downstream 118680 40666760 ~ 40666832 (-) True trnak-cuu_8
trnan-guu_8 other downstream 171805 40613634 ~ 40613707 (-) True trnan-guu_8
trnan-guu_7 other downstream 172224 40613215 ~ 40613288 (-) True trnan-guu_7
trnan-guu_6 other downstream 172643 40612796 ~ 40612869 (-) True trnan-guu_6

Expression Profile