RNA id: XR_002650967.1


Basic Information

Item Value
RNA id XR_002650967.1
length 642
lncRNA type inter_gene
GC content 0.48
exon number 5
gene id LOC111194176
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23172948 ~ 23174800 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGATATAGTAATTGTAAGCTCatgttgtgttttgttgctTTCTGTTTTACAGCATCCAACACATGTCCAGGCCACTCCTGACCCTTCACGGTTTGGCCAGTGTGGTGTTTTCAAATGCCCCTGCTTCAGTTTTGACACTGACCAGCGATTTAATAACAGCCTACATCTACAAAACCATATCAAACAAGCAGTCGAGAATAACGGAAAGTTCAGCGTGTTGAACGTGTGACTGATGAAGGAGATAGAATGGGCAACGTCTCCTTTGAACAGTTCTGGAAGAGGGTGACAAAGCTTTTTTAAAGCTGTCACTGGTTTGTCGTCTCTTCCGGGACATTGTTTGGACAACAATCATTCCGGGCCTGGGCACATTTCGAGTGGCTTGACAGTGTAGTGCCATGAAAACATCACAGTGCTGCATGTAAAGACGAGTTTCGCAGGATGTACGAACTGCAGTGCTGCCAGAACTGTCAAGAAACTTATAAAGACTGCATACTGGGCTACGTTGGGCATGGGAGACGAGGGGAGCTTGTGGCATTTTACAGCGAAAACGAGCACCCTGGATTCTGCAGCCAGCTTCatgagtggctgggtgtgtgagtggctgggtgtgtgagtggctgggtgtgtgagtggctgggtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650968.1 lncRNA upstream 589 23170450 ~ 23172359 (+) True LOC111194177
XR_002650974.1 lncRNA upstream 8533 23162876 ~ 23164415 (+) True LOC111194182
TU194465 lncRNA upstream 38808 23130286 ~ 23134140 (+) True G143675
TU194464 lncRNA upstream 57690 23115037 ~ 23115258 (+) True G143674
TU194422 lncRNA upstream 103073 23068374 ~ 23069875 (+) True G143642
XR_002650973.1 lncRNA downstream 6917 23181717 ~ 23185264 (+) True LOC111194181
TU194497 lncRNA downstream 12228 23187028 ~ 23189236 (+) True G143694
TU194498 lncRNA downstream 12228 23187028 ~ 23188570 (+) False G143694
TU194479 lncRNA downstream 116512 23291312 ~ 23291924 (+) True G143684
TU194502 lncRNA downstream 118192 23292992 ~ 23293214 (+) True G143698
XM_007230337.3 mRNA upstream 150536 23016781 ~ 23022412 (+) False adcyap1
XM_007230336.3 mRNA upstream 151594 23016781 ~ 23021354 (+) True adcyap1
XM_015606853.2 mRNA upstream 151594 23016781 ~ 23021354 (+) False adcyap1
XM_022677624.1 mRNA upstream 168954 22991462 ~ 23003994 (+) True LOC103031382
XM_022677622.1 mRNA downstream 15664 23190464 ~ 23250746 (+) True smchd1
XM_022677623.1 mRNA downstream 15668 23190468 ~ 23250746 (+) False smchd1
XM_007238909.3 mRNA downstream 80877 23255677 ~ 23290625 (+) True emilin2
XM_022677727.1 mRNA downstream 219410 23394210 ~ 23395111 (+) True LOC111194251
XM_022677648.1 mRNA downstream 260794 23435594 ~ 23442090 (+) True LOC103023765
trnaa-cgc_2 other upstream 107590 23065287 ~ 23065358 (+) True trnaa-cgc_2
trnat-cgu other upstream 107849 23065028 ~ 23065099 (+) True trnat-cgu
TU194024 other upstream 562501 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 562501 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 1298562 21870676 ~ 21874386 (+) True G143182
XR_002650977.1 other downstream 209982 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 210368 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 210368 23385168 ~ 23395240 (+) False LOC111194251
TU194570 other downstream 219486 23394286 ~ 23395240 (+) False LOC111194251
LOC111194174 other downstream 228888 23403688 ~ 23406894 (+) True LOC111194174

Expression Profile