RNA id: XR_002650973.1


Basic Information

Item Value
RNA id XR_002650973.1
length 590
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC111194181
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23181717 ~ 23185264 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccatcccaaaaaaaacaaaacatagttATAATAAAGTTTCATTGTTAtcatgaagttaataaaggtgaggctatacagaatgcccagacTCTTTTTTCCATCAACcgtaccgaaaacataccgaaCCGTGGGTTTATACAGAGGTGTGAACTgaactgagatttttttttgtaccattaCAGCCCtatgcaacactgaagaagacttattgtttaagaaaaatgtttattaagaacaaatctctgaaattattaaacaaacaatgcaaacaatgatccacaggcctGAACATCTGCCTTAACCTGGACCAAGCGCAGTGGTGGGAAATATCTTGGTTCGGGTCTGATTCAGGCAGAGAATCTGAGCTTTTCTCTCAGTAGCTGCATTCTAAAGTCTAGGCTGAAGCTGAGGTAGAACAGGCCCTCAGTAGGAGGGCCCAGGTCTGACCCAGGATCTGCACAGTCAtgcttgtgaaaaggaagtcaacttaagagcattaaaaCCACTCCGCCAGCAGCTTCACTCCCCAGTGGGGGTAAAGCTCCTCTCTGACAAACCGAATGTGCCGAGGACGGTTGGTTACCCAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194478 lncRNA upstream 2033 23146051 ~ 23179684 (+) True G143683
XR_002650967.1 lncRNA upstream 6917 23172948 ~ 23174800 (+) True LOC111194176
TU194491 lncRNA upstream 7929 23170596 ~ 23173788 (+) True G143691
XR_002650968.1 lncRNA upstream 9358 23170450 ~ 23172359 (+) True LOC111194177
XR_002650974.1 lncRNA upstream 17302 23162876 ~ 23164415 (+) True LOC111194182
TU194497 lncRNA downstream 1764 23187028 ~ 23189236 (+) True G143694
TU194498 lncRNA downstream 1764 23187028 ~ 23188570 (+) False G143694
TU194479 lncRNA downstream 106048 23291312 ~ 23291924 (+) True G143684
TU194502 lncRNA downstream 107728 23292992 ~ 23293214 (+) True G143698
TU194503 lncRNA downstream 108802 23294066 ~ 23294388 (+) True G143699
XM_007230337.3 mRNA upstream 159305 23016781 ~ 23022412 (+) False adcyap1
XM_007230336.3 mRNA upstream 160363 23016781 ~ 23021354 (+) True adcyap1
XM_015606853.2 mRNA upstream 160363 23016781 ~ 23021354 (+) False adcyap1
XM_022677624.1 mRNA upstream 177723 22991462 ~ 23003994 (+) True LOC103031382
XM_022677622.1 mRNA downstream 5200 23190464 ~ 23250746 (+) True smchd1
XM_022677623.1 mRNA downstream 5204 23190468 ~ 23250746 (+) False smchd1
XM_007238909.3 mRNA downstream 70413 23255677 ~ 23290625 (+) True emilin2
XM_022677727.1 mRNA downstream 208946 23394210 ~ 23395111 (+) True LOC111194251
XM_022677648.1 mRNA downstream 250330 23435594 ~ 23442090 (+) True LOC103023765
trnaa-cgc_2 other upstream 116359 23065287 ~ 23065358 (+) True trnaa-cgc_2
trnat-cgu other upstream 116618 23065028 ~ 23065099 (+) True trnat-cgu
TU194024 other upstream 571270 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 571270 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 1307331 21870676 ~ 21874386 (+) True G143182
XR_002650977.1 other downstream 199518 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 199904 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 199904 23385168 ~ 23395240 (+) False LOC111194251
TU194570 other downstream 209022 23394286 ~ 23395240 (+) False LOC111194251
LOC111194174 other downstream 218424 23403688 ~ 23406894 (+) True LOC111194174

Expression Profile