RNA id: XR_002650975.1


Basic Information

Item Value
RNA id XR_002650975.1
length 3050
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC111194183
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23323922 ~ 23327810 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTACAAAACTGTGCATAATAAATTgcaaatcataatttaaaaaacaatgaatgaattgGTTACCAAAACTTAATCAGAAATTTCTTGTAATCACATTCTTTTCACCAGATCAACAAAGACATTTGCGAAATGTTTGGAATACAGCGCAGCCTGTGTTCACCCTATCACCCACAAACCAATGGGTTAGTGGAAAAGATGAATGGCACCATACAGAGgtatatttattaagttttttaCACTTAGTTTCAGGTTTATTAGGTTTTACTGTGGTTACTACTGTGTatggctgtttgtgtgtgtgaccaATGCTAACTAAAACTTGCATATAAGACATTTAAATGATTATCAGGACCCTCACTGAGAAGGCATTAGTTGAGTGGTGAATCCTTctaagcactgcagtgacactgacatggtaaTGGATGAGTTCTCTTTACTGCATCATACACCTTGTCCTCCATCTGGATGGCAATCCTGTTTTTGAATGATCTACTACCAAAATAATACCTTCTCACTGATGGGGATACTAAACATTGAATAATGGAGTAAATATGTATCTAATAATGTAGCTAATGAGTGCAGTTCATGTAGACATAAACCCTGTAACTTTGTAGcggtgtaattacacattatgtAACagggagaaaaacaaaaaagtattgCATGTTGTCACtgtaacatataatttttttcaggaTTCTCGGAAAACTGTGCAAAGAGAAACCACAGACATGGGACAAATATCTTAATGCTGTGCTTTTCAgtataagaacaaaaaaacaactgacAACACAACACTCACCATTTTACCTCATGTTTGGACGGGAGGCACGCTACTTCTCTGAAGTACCTGACTCTTTCTGTGTGAGTTTGCCCAATGCAAATCATGTCCTGTTGTTTTTGTGAAGTACTGTTTatcatgtttaattaattaagcaaCAGTACACACattgtgttctctgaaattatttttcttattttcattgGCAAGGTCAATGGAACAGTGGAAGACATACTCCAGTCTGAGATTGTCAGGCCTTCCATACAAATGCAGGACAAAGTGTATGAGGCAGTAAAGAGGAACATGCAAACTGCAAGAAACAAAGTCAGAGCAAGAAAACAAGCTGCCAAAGCTGAATCTCACACCTTTTCTGTAGGCGAAAAGGTTCTAAGGAGAAATGTAAGAAGTCAGCAGAGGAAAGGAGGGAAATTAGATAGGGATTTTCTGGGTCCCTTCACCATAGTTGCACTACAGGGCAAAAGTGCGGATTTGTGTGACGAAAATGGTCTGATGAGGCCAAAAATCAACCTGGATCACTTGATCCCATTTTTGGAGCAGGAAACCCGCGTTCCTCACAGGCTCCAAGCATCCAGTGATTTAACAGGTGAGTTTCCTTTTCTGTACAAATATTCAAGATTCTGACAACCCCTGTTTTAGTAATGAAGGGCACAGCACCTCCGTACAAATGGTTGAGAGTCTTGTGTCACTTGTGCCATGTAAAGAGCAGTGCACCTGTCTCAGACACGAAGAGCAGGGTATCTGTCAACACAGAGGGAAACACCAGTGCACTTCCTGACGCTGGAATTGCAGATGTTGAGTCACCTGCCTCAGACACAAAGAGCACAGCATCTGCCAACACAGAGGGAAACACCAGTGCACTTTCTGTCGCTGGAATTGCAGATGTTGAATCACCTGCCTCAGACACAAAGAGCATAGCTACTCCCAACACAAAGGGAAACACTAGTGCACTTCCTGTCTCTGCAGTTAAAGTTGTCACACATGAGGGTGATATTGAGAGTGGTAAGTTGCATATTAACAACTTTTGGTAATGTTACAGAATTGTTAAATTACCATTATTGTTGTTGAAAATGTAGTTTATCACCTTTTTTCTCATCTGAAAAGACAAACctttttatattaacattttcacAATTATGTTTCTCCTTTGACATTTGACAGGGATTGATGCTATTTGGTCTGGCAGAAGTGGCTTCGTGTTGATGGCCAAAATTGGGCCATACAAAGTATTTCAAATGGATATAGCACGTCTTGCACCTGGCATGGAACTGGAGAGTGAGGTTATAAATGCATACATATTTGCAATGGTCAGGCAACATAATCAACGGTCTGAGGGGGAGGCCTACTATATTGACAGTTTTGGAATGACCAAATTATGGCAAGGATCATACCAAATCTTAAGAAAGtgTAATCCAAGCCAATATGAAGTCATTTTGGGTGTGATAAATGAGCATAACCACTGGACTCTTGCTGTGAGTATCCATGAATGCACTTCAGAAGCATATTGATATTGACAGAATATGCTTAACCTGTGTAAATCATGGTGTCCTAATCTATCCAGACTAAGCTGTTGTGTCTGAAGGTTGATGTGCTTTAAGAAGTAGAAGCTcacatatttctatttttgtttgaAACTGAAATCTGAAGCCACATCAGCCTTATATGGATGACATTTAATTCTCATGCTACAACAAGTGGAAAGTTTTTGAGTTGATTgttaattgttgttttatattttaggtcatttatccacaacaaaaaaaaaacagtgtttttggaTCCCTTGGGGGAGTCAAAAACCAAGGTGACCAAGTGCCTGGAAACCACAAGGTAATATGTTATAAACATGTTCATGCTTTACTAAAAGTTTATATGAATGATGCCATTTACTTAATTTGTTTTTCAGAGCCTTTATGAGGAATAAAGGATGCAATGTCTCAAGATGGACATGCAAGACTGTTCCACACCCCAAACAGTTAGATGGAACATCATGTGGAGTCTTTGTTTGCAAGGTATGCTGTCATTAAATACATCAAATTATTCCCaaactttgttttattaattaaatgtaagtAAAGTTCAAGCATATTTTACACGTATATGTTATGTAGTAATTATACTAATATCAATTTAGTAGTAGTAAACTTGTTATTGTAGTCTGTAAGTAAGTGTACTTAACATTTGATGTAAAGCTTTTTGATGATACTTTTATCAAATATAGCTAATTCAAATGAGATGGGCAGTATGGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194511 lncRNA upstream 11454 23307061 ~ 23312468 (+) True G143707
TU194506 lncRNA upstream 25532 23297810 ~ 23298390 (+) True G143702
TU194505 lncRNA upstream 28063 23295473 ~ 23295859 (+) True G143701
TU194503 lncRNA upstream 29534 23294066 ~ 23294388 (+) True G143699
TU194502 lncRNA upstream 30708 23292992 ~ 23293214 (+) True G143698
TU194569 lncRNA downstream 57358 23385168 ~ 23386100 (+) False LOC111194251
XR_002650976.1 lncRNA downstream 127963 23455773 ~ 23457306 (+) True LOC111194184
TU194596 lncRNA downstream 148760 23476570 ~ 23657120 (+) True G143776
XR_453571.2 lncRNA downstream 190511 23518321 ~ 23520504 (+) True LOC103022725
XR_002650990.1 lncRNA downstream 196162 23523972 ~ 23525935 (+) True LOC111194207
XM_007238909.3 mRNA upstream 33297 23255677 ~ 23290625 (+) True emilin2
XM_022677622.1 mRNA upstream 73176 23190464 ~ 23250746 (+) True smchd1
XM_022677623.1 mRNA upstream 73176 23190468 ~ 23250746 (+) False smchd1
XM_007230336.3 mRNA upstream 302568 23016781 ~ 23021354 (+) True adcyap1
XM_022677727.1 mRNA downstream 66400 23394210 ~ 23395111 (+) True LOC111194251
XM_022677648.1 mRNA downstream 107784 23435594 ~ 23442090 (+) True LOC103023765
XM_022678211.1 mRNA downstream 244993 23572803 ~ 23664047 (+) False LOC103024399
XM_022678212.1 mRNA downstream 267313 23595123 ~ 23664047 (+) False LOC103024399
XM_022678209.1 mRNA downstream 277449 23605259 ~ 23664047 (+) True LOC103024399
trnaa-cgc_2 other upstream 258564 23065287 ~ 23065358 (+) True trnaa-cgc_2
trnat-cgu other upstream 258823 23065028 ~ 23065099 (+) True trnat-cgu
TU194024 other upstream 713475 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 713475 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 1449536 21870676 ~ 21874386 (+) True G143182
XR_002650977.1 other downstream 56972 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 57358 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 57358 23385168 ~ 23395240 (+) False LOC111194251
TU194570 other downstream 66476 23394286 ~ 23395240 (+) False LOC111194251
LOC111194174 other downstream 75878 23403688 ~ 23406894 (+) True LOC111194174

Expression Profile