RNA id: XR_002650979.1


Basic Information

Item Value
RNA id XR_002650979.1
length 176
RNA type ncRNA
GC content 0.49
exon number 4
gene id LOC111194189
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1626955 ~ 1638255 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAATTTTGGTGCAAGTGGGGTGGATGGGTGAAAGTCCAAGTGTGTTGATGGAAGGCGCAATATGAAGGATgtggttaCTAGTGGGAGCCTGAGGCAAATCTCACCATCCCATCCTCGTCTGAAACACACAGTGAGAGCTGCAGAGTGACCGGAGGACCTGCAAATCCTAAAACT

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186507 lncRNA upstream 89674 1532189 ~ 1537281 (+) True G137837
TU186503 lncRNA upstream 95032 1524712 ~ 1531923 (+) True G137833
TU186536 lncRNA upstream 109027 1516479 ~ 1517928 (+) True G137858
TU186529 lncRNA upstream 114016 1509653 ~ 1512939 (+) False G137857
TU186531 lncRNA upstream 114016 1509653 ~ 1512939 (+) True G137857
TU186561 lncRNA downstream 82487 1720742 ~ 1720954 (+) True G137880
TU186493 lncRNA downstream 123783 1762038 ~ 1770190 (+) True G137827
TU186495 lncRNA downstream 123783 1762038 ~ 1767436 (+) False G137827
TU186572 lncRNA downstream 166672 1804927 ~ 1806180 (+) True G137890
TU186570 lncRNA downstream 169950 1808205 ~ 1809612 (+) True G137889
XM_022677766.1 mRNA upstream 32879 1564930 ~ 1594076 (+) True cdc73
XM_022677660.1 mRNA upstream 135615 1489312 ~ 1491340 (+) True LOC111194186
XM_022677661.1 mRNA upstream 135648 1489305 ~ 1491307 (+) False LOC111194186
XM_022677760.1 mRNA upstream 177928 1436940 ~ 1449027 (+) True rnf32
XM_022677759.1 mRNA upstream 291762 1300585 ~ 1335193 (+) True rbm33
XM_022677768.1 mRNA downstream 46138 1684393 ~ 1692239 (+) True LOC103022771
XM_022677770.1 mRNA downstream 85280 1723535 ~ 1735903 (+) True LOC103022156
XM_022677771.1 mRNA downstream 101916 1740171 ~ 1746238 (+) True LOC111194259
XM_022677773.1 mRNA downstream 138970 1777225 ~ 1802319 (+) True tsc22d2
XM_022677776.1 mRNA downstream 138972 1777227 ~ 1802319 (+) False tsc22d2
TU186490 other upstream 126999 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 587029 1037869 ~ 1039926 (+) False mrps14
TU186393 other upstream 638317 980980 ~ 988638 (+) True G137756
XR_002651002.1 other upstream 845759 762716 ~ 781196 (+) False rfwd2
TU186165 other upstream 1532382 93285 ~ 94573 (+) True G137614
TU186579 other downstream 197222 1835477 ~ 1838517 (+) False LOC103042893
TU186618 other downstream 384500 2022755 ~ 2024386 (+) True G137929
TU187669 other downstream 2163598 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 2195000 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 2195000 3833255 ~ 3834460 (+) False G138701

Expression Profile