RNA id: XR_002650993.1


Basic Information

Item Value
RNA id XR_002650993.1
length 1498
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id LOC111194210
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 27252358 ~ 27255652 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGATAAGAAATGGGCAGAAGTGGAATGGAAGCCACAAACTATTGATCACACTGTTCAAAAAGACACACACAGCTGTGGAGTTTTTGTTATGGAGATGGCCAAGCAGCTCATAAACTTCTACCCTCGCTTACCATCTCACATTGTAGTTGATGAGAGAATTGATCAGCTCAGAAGGACAATGGCATCCGAAATTATATCTGCTTCAGAGGATCTTGTAAATGCTTGTCAGTGGTGCGCAGCATATACAAGCCGAAACAAAGATGTCTTTTGGGTAAGAACACCTATAGTGGCACATATTGTACAGCAATGTTGGGTCATGTACAATCTAATATTAACAATAGCTCATCATGTGATTTTATGATATACAGATATGTTGCAGTACATGTGAGCGATGGAACCACATAACTTGCGTAGCCATGTCAAAGGATGAATTTAATGAGTATGAGGGAAAAGATcggaattattattgtccagcATGTGCTGAAAGCTCCAAACTGCCAATAAATGAAGACATATAAAAGATGACCTCTGAAAAAGGACTAAATGACCAAAGAGAAGTACAATGATGTCagtattattttgttataaagTGTTGTGTTACATTTGTTTATTGATTTGTTAATCTAACACTTGTTTATCTATCACTTGTCATTAAAATAGTGTGTATAATTACTGTTCAAATGTACTGTCTAAATGaatattttctataaataaGTGTGACACTACCAGGATAATTATCACAATTTAACAGCAACAACAGCACAGAACGGGGAATCTGACCCCTACCGACCGACCAGCGCTCTCAAGGTTCTGAACACTCCAGCAGTTGGGGACAGGCCAAACCGCTGCGGAGCCAAGAAACCGCACACAAGCCCAGATGCACCTCACTCTAAAAACTAGCCATAAATGAAAGATTTAAATTTTTGACTCCACATGCTGCCTGAACATTTCTTCCCCTTGTGCTCAATCTCTGCCTTTCCTCTCACAGCTGACTAAACCCAAGGAGCTTGCCTGCTTGCTGGACACCCGCACCAAGCAGTGAAATTCACCATTAAGCCATTCCACTGGATCCTTGTCGAGTTTAAACCCCTTGTAACAGATTGAAGTCTCCTACGGGGTTGGAGTTTATATCTTACCCAAAGAAATCTTATTAGTGACCCCAACTGCCCCCTCCCACTCCCCATCATTATATACCTACATGCATGCATAGAAAGTTTCTATTAGCAATATGCCAGCTGCCAATGTATTAGAAGTACTGTATATTCTCTAACTCAGTAAATGCTGTTCTCATGTTCATATGTATGTAGCATGGTATGTCGTCGTAACTTATACTGACCATGCACTGTGAGTACATACTCCACTTTCCTGGAtgctacattttttaatgtgtgctgtatttattgtagtgttttattttcttttttgctaaataattccacattTGCACATTGTCTATATTGTTCTTTGTTTCACTGTGGTTCTAGAAGGaatgttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195666 lncRNA upstream 435031 26817035 ~ 26817327 (+) True G144617
TU195660 lncRNA upstream 450337 26798916 ~ 26802021 (+) True G144611
TU195656 lncRNA upstream 466594 26783243 ~ 26785764 (+) True G144608
TU195611 lncRNA upstream 531201 26720432 ~ 26721157 (+) True G144573
TU195581 lncRNA upstream 643674 26608211 ~ 26608684 (+) True G144553
TU195747 lncRNA downstream 6598 27262250 ~ 27263283 (+) True G144686
TU195745 lncRNA downstream 41793 27297445 ~ 27300088 (+) True G144684
XR_002651037.1 lncRNA downstream 180161 27435813 ~ 27438301 (+) True LOC111194352
XR_002651036.1 lncRNA downstream 180161 27435813 ~ 27438301 (+) False LOC111194352
TU195872 lncRNA downstream 181424 27437076 ~ 27439508 (+) True G144782
XM_022678330.1 mRNA upstream 1235 27248351 ~ 27251123 (+) True LOC111194356
XM_022678310.1 mRNA upstream 136514 27100824 ~ 27115844 (+) True ndufs2
XM_022678301.1 mRNA upstream 217279 26935083 ~ 27035079 (+) True focad
XM_007255051.3 mRNA upstream 645167 26602015 ~ 26607191 (+) True rpl34
XM_022678299.1 mRNA upstream 784538 26448792 ~ 26467820 (+) True etnppl
XM_022678314.1 mRNA downstream 46214 27301866 ~ 27305675 (+) True LOC111194351
XM_007255175.3 mRNA downstream 775105 28030757 ~ 28084025 (+) True adgra3
XM_022678320.1 mRNA downstream 1043844 28299496 ~ 28368962 (+) True LOC103045778
XM_022678322.1 mRNA downstream 1155661 28411313 ~ 28445089 (+) True LOC103035875
XM_007255170.3 mRNA downstream 1202252 28457904 ~ 28475027 (+) True LOC103035569
TU195731 other upstream 43767 27206742 ~ 27208591 (+) True G144671
TU195662 other upstream 440231 26807716 ~ 26812127 (+) True G144613
TU195623 other upstream 497916 26750835 ~ 26754442 (+) True G144584
TU195371 other upstream 1463516 25786737 ~ 25788842 (+) True G144372
TU195320 other upstream 1598108 25653006 ~ 25654250 (+) True G144333
XR_002651040.1 other downstream 1370392 28626044 ~ 28658921 (+) True LOC103038323
trnas-uga_32 other downstream 1841675 29097327 ~ 29097408 (+) True trnas-uga_32
XR_002651042.1 other downstream 1900073 29155725 ~ 29170570 (+) False LOC103041452
XR_002651041.1 other downstream 1900226 29155878 ~ 29170570 (+) False LOC103041452
TU196444 other downstream 2173586 29429238 ~ 29432014 (+) False LOC111194370

Expression Profile