RNA id: XR_002651029.1


Basic Information

Item Value
RNA id XR_002651029.1
length 1251
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC111194334
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19230169 ~ 19282116 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCACTGCGGTCAGATCCACTGTCTCCTCCAACCAGACTGAGAGACTGGAGCAAAGAAGAAGACGTGCATGAGCGacaaaagaggaggaggaggaggtcaAGTAGTGATGTGTCCACAGTGATGTGCTGCTTCAAAAGGGGAGGAGTCAGAATACAGgtCAGCACTGTGTAATGAAGCAGTGGGAGTTGGCGAGGTCGAGGCTGAGAGCCAAGGAGAAGGAGAGAGCGCTTCACTCATTAAGATAAGACGGGTGTAAACGCCATTCATCAGCCTACAGCCCACTACTGCCATCCACTCCCAACAACAATACTCCACAAATCACCACGCTAATCAACCGCGGTGCCAGCAGGTTCCAGCACCACTGCCTCACAGAAAGCCGACTCTGCACATTCTGCAGACACTGGTCTACAGGGAGGAAATAGGGAGGAAATTGTGCAGAAAGTATAAAAGTCAggctctcttattctctctctctctttctctctctccctctctctttctctagctcTCTCCCAGTGCCACTTTCTACAAGCTGGAAGATTAAACGCTTTGGCTGCGTTTTTAATTGTTCTGGACTCTTAGCGAGAAATCacttcacttttttattattaacgaTTCTGTGCAAATTTAATTAAAGTCCCATCTCAGAAATATGGCTGTCGGTTCTGCAGGAAGACTTATGTAGAAGGTAAAACGCAGTGAAATACAAGCCGGAGGGCAAACCGCACGTTTTATCTGGATTTGACGTGTGTCGCAGGGCCAGCGTGGAGAACACGCTCTGTGGTTTTATAACACTTGGCTCTTTCTGAAGGACACTGGAAGGTGAAGGAAGAGAAGTGAATGGATTTATTACATCCTGGTTCATAACCCCTTTTAGCCCCCTTAAGACTGAGGTGGAAGAGGCTTTGCGATCTTGTTTTGTCGTGCTTTTATCTCAATAGTTGCCATGAGCTTTTTGCTTACCAGAATTGCTTACAGAATTGCTTACAGTACcgtgccattaaaaaaaaaaaagagtttgccCTCCCGTCCGAATTCTTGAAACTGTAGATATTTTACTGGAtgccaaaaactttttttaacttgtCTATCGTTGCATGATTAAGTGCATGATTAAGTGATATCATACTCTTAATCCATAGAATTTAATATGATATTGGCCCTTGCTTTGTAGCTATAACAGCTTCAATTCTACTTTAatgagccactaaaccctaaaccatattttttttccattaccagttaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192857 lncRNA upstream 11122 19213366 ~ 19219047 (+) True G142434
TU192855 lncRNA upstream 59373 19170527 ~ 19170796 (+) True G142432
TU192837 lncRNA upstream 108567 19120252 ~ 19121602 (+) True G142416
TU192839 lncRNA upstream 108567 19120252 ~ 19121602 (+) False G142416
TU192818 lncRNA upstream 235932 18991189 ~ 18994237 (+) True G142401
TU192875 lncRNA downstream 131516 19413632 ~ 19417683 (+) True G142450
TU192880 lncRNA downstream 137544 19419660 ~ 19422462 (+) True G142453
TU192883 lncRNA downstream 149315 19431431 ~ 19432138 (+) True G142455
TU192890 lncRNA downstream 150558 19432674 ~ 19433057 (+) True G142458
TU193091 lncRNA downstream 239561 19521677 ~ 19521888 (+) True G142603
XM_022678164.1 mRNA upstream 110639 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA upstream 110639 19094766 ~ 19119530 (+) False LOC103046799
XM_022678160.1 mRNA upstream 242728 18969886 ~ 18987441 (+) True LOC103047721
XM_022678161.1 mRNA upstream 242942 18969886 ~ 18987227 (+) False LOC103047721
XM_022677719.1 mRNA upstream 298024 18930879 ~ 18932145 (+) True LOC111188235
XM_022678166.1 mRNA downstream 143878 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA downstream 146726 19428842 ~ 19431174 (+) False LOC111194335
XM_007240884.3 mRNA downstream 806180 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA downstream 810544 20092660 ~ 20115213 (+) True ripk1
XM_022678173.1 mRNA downstream 920532 20202648 ~ 20220149 (+) True rnf138
TU192788 other upstream 336660 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 359852 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 371662 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 2025676 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 2156685 17058294 ~ 17073484 (+) True G142093
TU193111 other downstream 454190 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 935163 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1500467 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2316566 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 2363789 21645905 ~ 21646705 (+) True G143122

Expression Profile