RNA id: XR_002651033.1


Basic Information

Item Value
RNA id XR_002651033.1
length 577
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id LOC111194347
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 25826581 ~ 25848100 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatagctgaaaattcacaaaaaacccacattgtttaaattgtatttaggTGGAGTGGAAAAACAAGAAGAGCTAGCTAGATAAAAGTTTCTTTAACTGTAAACAAAGCCCTCTAACTTGCAGCCAGAGTGCCAAATCGTGAATTACAAGGACATTTACATTCATGCTGTAAGATTGCTTGTGAATATTATGTTTCTAAGGAGTTCCCAAACAAAGTTAGCCTGCTCCATGCTAGCCCCGTAACTCTCTGCTCTGTACAAGTTCAGGCAAAAGACAAAGGAGACTGCAGGAGGTGCCTCAAACCTTTCCAGAGACCATTCACTCAACTCTCTAAACAGAAATTTGGGGGATGACCATTGGGCAGCAACTAGACTGTACTGTTGAGATGAGTGATGAAAGCAACTGACAAACCATCCTTACGAGCATCGCCCGCTGGCTGGGGTAAGCTGGAGGCTGGAGAAGAGGAGTCGCACTGTGGGGAGTTTCTgtataaatGACAGAATATTGCAGCGCTGCCAGCTCGCAGGTCGAGGCCTCCATGCACAGTGCAACTCTCGAGCTGGTTTACCGCTGCGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195354 lncRNA upstream 15606 25743607 ~ 25810975 (+) False G144359
TU195355 lncRNA upstream 17857 25750346 ~ 25808724 (+) True G144359
TU195341 lncRNA upstream 124907 25701179 ~ 25701674 (+) True G144350
TU195263 lncRNA upstream 322446 25503885 ~ 25504135 (+) True G144293
TU195262 lncRNA upstream 322783 25503459 ~ 25503798 (+) True G144292
TU195397 lncRNA downstream 22569 25870669 ~ 25870965 (+) True G144395
TU195402 lncRNA downstream 126971 25975071 ~ 25985891 (+) True LOC111194346
XR_002651032.1 lncRNA downstream 126985 25975085 ~ 25985890 (+) False LOC111194346
TU195403 lncRNA downstream 135572 25983672 ~ 25985891 (+) False LOC111194346
TU195404 lncRNA downstream 162970 26011070 ~ 26011495 (+) True G144401
XM_007255204.3 mRNA upstream 22196 25801919 ~ 25804385 (+) True saxo1
XM_007255191.3 mRNA upstream 150209 25673233 ~ 25676372 (+) True LOC103042207
XM_007237453.3 mRNA upstream 205518 25617325 ~ 25621063 (+) True LOC103047430
XM_015607467.2 mRNA upstream 382034 25434570 ~ 25444547 (+) True rce1
XM_022678291.1 mRNA downstream 268356 26116456 ~ 26444978 (+) False col25a1
XM_022678290.1 mRNA downstream 268356 26116456 ~ 26444978 (+) True col25a1
XM_022678296.1 mRNA downstream 268356 26116456 ~ 26444978 (+) False col25a1
XM_022678294.1 mRNA downstream 268356 26116456 ~ 26444978 (+) False col25a1
XM_022678298.1 mRNA downstream 268356 26116456 ~ 26444978 (+) False col25a1
TU195371 other upstream 37739 25786737 ~ 25788842 (+) True G144372
TU195320 other upstream 172331 25653006 ~ 25654250 (+) True G144333
TU195258 other upstream 351887 25472123 ~ 25474694 (+) True G144290
TU195235 other upstream 447816 25375998 ~ 25378765 (+) True G144270
TU195051 other upstream 822410 24998773 ~ 25004171 (+) True G144146
TU195623 other downstream 902735 26750835 ~ 26754442 (+) True G144584
TU195662 other downstream 959616 26807716 ~ 26812127 (+) True G144613
TU195731 other downstream 1358642 27206742 ~ 27208591 (+) True G144671
XR_002651040.1 other downstream 2777944 28626044 ~ 28658921 (+) True LOC103038323
trnas-uga_32 other downstream 3249227 29097327 ~ 29097408 (+) True trnas-uga_32

Expression Profile