RNA id: XR_002651074.1


Basic Information

Item Value
RNA id XR_002651074.1
length 215
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC111194404
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40948527 ~ 40950045 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCAGGTGGTAAACTGGGTGCAAAGAGCAATATCATTTACAtctgtgaacttttttttttaatcaatgctAAAGGATTATTGAGTGGATACATCGTTTTTCAATGGCTGATTTAAATCCCTGATCACAAGTGACTGTTTTCACCTTCTTGGCACCACAGTAACATGGGGAATGAAACCTCAAAAGCAAGAAACCAAAATGCCTTGAATGAGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651073.1 lncRNA downstream 12594 40934400 ~ 40935933 (-) True LOC111194403
TU200435 lncRNA downstream 72041 40875427 ~ 40876486 (-) True G148120
TU200377 lncRNA downstream 116863 40831395 ~ 40831664 (-) True G148088
TU200362 lncRNA downstream 166526 40772650 ~ 40782001 (-) True G148077
TU200333 lncRNA downstream 255878 40675959 ~ 40692649 (-) True G148056
TU200511 lncRNA upstream 39177 40989222 ~ 40989474 (-) True G148173
XM_022678345.1 mRNA downstream 38665 40908857 ~ 40909862 (-) True LOC111194366
XM_015602604.2 mRNA downstream 114741 40824081 ~ 40833786 (-) True LOC103041524
XM_022678559.1 mRNA downstream 155768 40785512 ~ 40792759 (-) True ankrd53
XM_022678558.1 mRNA downstream 155794 40785512 ~ 40792733 (-) False ankrd53
XM_007250154.3 mRNA downstream 1100007 39845890 ~ 39848520 (-) True pop7
XM_022678347.1 mRNA upstream 70283 41020328 ~ 41023008 (-) True LOC111194367
XM_022678568.1 mRNA upstream 77081 41027126 ~ 41031436 (-) True LOC103042841
trnas-gcu_3 other downstream 192486 40755960 ~ 40756041 (-) True trnas-gcu_3
trnak-cuu_8 other downstream 281695 40666760 ~ 40666832 (-) True trnak-cuu_8
trnan-guu_8 other downstream 334820 40613634 ~ 40613707 (-) True trnan-guu_8
trnan-guu_7 other downstream 335239 40613215 ~ 40613288 (-) True trnan-guu_7
trnan-guu_6 other downstream 335658 40612796 ~ 40612869 (-) True trnan-guu_6

Expression Profile