RNA id: TU52942


Basic Information

Item Value
RNA id TU52942
length 323
lncRNA type intronic
GC content 0.34
exon number 2
gene id G39284
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 43855 ~ 44218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttagagctgggcgattaatcgattttattgattaattcgaatttacagttaaggacgatgtgtttttatgaaaatcgattttctctgagttttcattttcaccaccgacgctcccctaaacttagccccgcccctctctccctgatttatgtaatttacgtaaaaataaagttattttaagaCGTGCCTGCCTATTtttaaaagcaacagaagttgttcatttgttggagttcatttgaataatttctaacgttaatactttacagcttcaaaaacatgtattatgcaaattaggcgatgacgtcatttagcgacttttaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52996 lncRNA downstream 109674 153892 ~ 154288 (+) True G39322
TU53001 lncRNA downstream 130607 174825 ~ 182840 (+) True G39327
TU53006 lncRNA downstream 175926 220144 ~ 228257 (+) True G39331
XR_002649912.1 lncRNA downstream 204555 248773 ~ 255441 (+) True LOC111192488
TU53021 lncRNA downstream 250481 294699 ~ 295077 (+) True G39346
XM_022669457.1 mRNA upstream 19984 506 ~ 23871 (+) True ptk7
XM_022670127.1 mRNA downstream 114884 159102 ~ 238996 (+) True LOC103034506
XM_022669464.1 mRNA downstream 237367 281585 ~ 291022 (+) True commd2
XM_022669465.1 mRNA downstream 253049 297267 ~ 380545 (+) True wwtr1
XM_022669466.1 mRNA downstream 253051 297269 ~ 378499 (+) False wwtr1
XM_022669467.1 mRNA downstream 253051 297269 ~ 378499 (+) False wwtr1
XR_002649913.1 other downstream 237367 281585 ~ 291022 (+) False commd2
XR_455709.3 other downstream 878539 922757 ~ 963284 (+) False plekho2
TU53369 other downstream 1162569 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 1175588 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 1366228 1410446 ~ 1413799 (+) False LOC111192494

Expression Profile