RNA id: TU53006


Basic Information

Item Value
RNA id TU53006
length 366
lncRNA type sense_over
GC content 0.52
exon number 2
gene id G39331
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 220144 ~ 228257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGAGGGAgtacaattggccctgctccctccgggtgggtagagtagatggcgctctctccccacatcactcctacggggatgtctgcagcacagggcgtctgtgagctgatgtactggagccgagccgctgcgctttcctccaagcgcgctggctgctcggtaatgctgcatcagcagcagctcgaaaagaagcggtggctgacttcacatgtatcggaggaagcatgtgctagtcttcaccctcctggtgtgttggggcatcactagtgatagggggagtcctaatgaatgggttgggtaattggccgtgtaaattggggagaaaatgggaaaaaaattagaaataaaattattaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53001 lncRNA upstream 37304 174825 ~ 182840 (+) True G39327
TU52996 lncRNA upstream 65856 153892 ~ 154288 (+) True G39322
TU52942 lncRNA upstream 175926 43855 ~ 44218 (+) True G39284
XR_002649912.1 lncRNA downstream 20516 248773 ~ 255441 (+) True LOC111192488
TU53021 lncRNA downstream 66442 294699 ~ 295077 (+) True G39346
TU53022 lncRNA downstream 66912 295169 ~ 295569 (+) True G39347
TU53030 lncRNA downstream 140886 369143 ~ 369781 (+) True G39352
TU53025 lncRNA downstream 182878 411135 ~ 412188 (+) True G39349
XM_022669458.1 mRNA upstream 140114 32499 ~ 80030 (+) True LOC103033866
XM_022669459.1 mRNA upstream 141752 32499 ~ 78392 (+) False LOC103033866
XM_022669460.1 mRNA upstream 141752 32499 ~ 78392 (+) False LOC103033866
XM_022669457.1 mRNA upstream 196273 506 ~ 23871 (+) True ptk7
XM_022669464.1 mRNA downstream 53328 281585 ~ 291022 (+) True commd2
XM_022669465.1 mRNA downstream 69010 297267 ~ 380545 (+) True wwtr1
XM_022669466.1 mRNA downstream 69012 297269 ~ 378499 (+) False wwtr1
XM_022669467.1 mRNA downstream 69012 297269 ~ 378499 (+) False wwtr1
XM_022669469.1 mRNA downstream 189111 417368 ~ 447315 (+) True LOC103032290
XR_002649913.1 other downstream 53328 281585 ~ 291022 (+) False commd2
XR_455709.3 other downstream 694500 922757 ~ 963284 (+) False plekho2
TU53369 other downstream 978530 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 991549 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 1182189 1410446 ~ 1413799 (+) False LOC111192494

Expression Profile