RNA id: TU53022


Basic Information

Item Value
RNA id TU53022
length 401
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G39347
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 295169 ~ 295569 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttatcaaaccccagaacctactaatctaaccagcacagctccatccatctgttatcaaaccccagaatctactaatctaaccagcacagcgccatccatctgttattaaattccagaatctactaatctaaccagcacagctccatccatctgttatcaaaccccagaatctactaatctaaccagcacagcaccatctatctgttatcaaaccccagaacctactaatctaaccagcacagctccatccatctgttatcaaaccccagaatctactaatctaaccagcacagctccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcgccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcgccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53021 lncRNA upstream 92 294699 ~ 295077 (+) True G39346
XR_002649912.1 lncRNA upstream 39728 248773 ~ 255441 (+) True LOC111192488
TU53006 lncRNA upstream 66912 220144 ~ 228257 (+) True G39331
TU53001 lncRNA upstream 112329 174825 ~ 182840 (+) True G39327
TU52996 lncRNA upstream 140881 153892 ~ 154288 (+) True G39322
TU53030 lncRNA downstream 73574 369143 ~ 369781 (+) True G39352
TU53025 lncRNA downstream 115566 411135 ~ 412188 (+) True G39349
TU53053 lncRNA downstream 241536 537105 ~ 538332 (+) True G39372
TU53052 lncRNA downstream 241715 537284 ~ 537979 (+) False G39372
TU53054 lncRNA downstream 241715 537284 ~ 538332 (+) False G39372
XM_022669464.1 mRNA upstream 4147 281585 ~ 291022 (+) True commd2
XM_022670127.1 mRNA upstream 56173 159102 ~ 238996 (+) True LOC103034506
XM_022669458.1 mRNA upstream 215139 32499 ~ 80030 (+) True LOC103033866
XM_022669465.1 mRNA downstream 1698 297267 ~ 380545 (+) True wwtr1
XM_022669466.1 mRNA downstream 1700 297269 ~ 378499 (+) False wwtr1
XM_022669467.1 mRNA downstream 1700 297269 ~ 378499 (+) False wwtr1
XM_022669469.1 mRNA downstream 121799 417368 ~ 447315 (+) True LOC103032290
XM_015601581.2 mRNA downstream 121816 417385 ~ 447315 (+) False LOC103032290
XR_002649913.1 other upstream 4147 281585 ~ 291022 (+) False commd2
XR_455709.3 other downstream 627188 922757 ~ 963284 (+) False plekho2
TU53369 other downstream 911218 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 924237 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 1114877 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 1484122 1779691 ~ 1782660 (+) False muc2

Expression Profile