RNA id: TU53217


Basic Information

Item Value
RNA id TU53217
length 515
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G39506
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 745568 ~ 750620 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccgccATGCTGGTACGGGTCTCTGCTCTCCCGGCTGCTCTCTGACCCCAGTGCCTGAGTGCCTCTCCCCTTTGGCCGGGGAAAAACTCGGACGTTTGCCCGCTTGGAGGATCCAGGAGGCGGCGGCGGAAAGGCTGGAGGTCGCTGCCCGGGGGGTCGAGGGTCCTGCCCCGCTGCTCTTTGGCCGGTGTCCTGCCCGGCACACAAAGGTTCTGGTGCTGTTTGGGTTCTGGTGGCAGTTCTGAAGGATGCCGGGTGCGTGTCCGGCTCCAGGCTGCTGGTAAGGTTTCTGCTGTTTGATTTGGATTAAGGATGGCCCACAGGATGCCGACACAGGGCAAAGTGACCATCGCTGTGGACGAGTACAGTTCCAACCCCACGCAGGCCTTCACCCACTACAACATCAACCAGAGCCGCTTCCAGCCCCCCCACGTCCACATGTGAGTAACCCCATAGCGGATCCTCTCATGCTGCAGGAGATTCACACCGCTGATACATTTTTGGACACATACGTT

Function

GO:

id name namespace
GO:0060030 dorsal convergence biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53215 lncRNA upstream 30350 712833 ~ 715218 (+) True G39504
XR_002649914.1 lncRNA upstream 141641 601856 ~ 603927 (+) True LOC111192489
TU53159 lncRNA upstream 197755 547609 ~ 547813 (+) True G39459
TU53157 lncRNA upstream 198216 547081 ~ 547352 (+) True G39457
TU53152 lncRNA upstream 205740 539498 ~ 539828 (+) True G39452
TU53223 lncRNA downstream 884 750822 ~ 753837 (+) True G39511
TU53225 lncRNA downstream 17400 767338 ~ 767614 (+) True G39512
TU53243 lncRNA downstream 129747 879685 ~ 879896 (+) True G39529
TU53256 lncRNA downstream 214990 964928 ~ 967328 (+) True G39539
TU53274 lncRNA downstream 294170 1044108 ~ 1045342 (+) False pdcd7
XM_007239783.3 mRNA upstream 63946 671881 ~ 681622 (+) False immp1l
XM_007239784.2 mRNA upstream 63946 672073 ~ 681622 (+) False immp1l
XM_022669474.1 mRNA upstream 63946 675749 ~ 681622 (+) True immp1l
XM_022669472.1 mRNA upstream 107673 618157 ~ 637895 (+) True LOC103036425
XM_007260221.3 mRNA downstream 172819 922757 ~ 963284 (+) True plekho2
XM_022669475.1 mRNA downstream 224999 974937 ~ 1000284 (+) True ankdd1a
XM_007260222.3 mRNA downstream 261701 1011639 ~ 1036934 (+) True clpx
XM_007260223.3 mRNA downstream 261701 1011639 ~ 1036934 (+) False clpx
XM_022670130.1 mRNA downstream 288635 1038573 ~ 1045347 (+) True pdcd7
XR_002649913.1 other upstream 454546 281585 ~ 291022 (+) False commd2
XR_455709.3 other downstream 172819 922757 ~ 963284 (+) False plekho2
TU53369 other downstream 456849 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 469868 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 660508 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 1029753 1779691 ~ 1782660 (+) False muc2

Expression Profile