RNA id: TU53256


Basic Information

Item Value
RNA id TU53256
length 2369
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G39539
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 964928 ~ 967328 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatattcaaaccTCACATCAGCATGAGAATagtataaaatagtataaaatatgCAAACAATTATATGTATCTGTACTTCCAGAgatgtacactgacatgccaaaagtcataggacagcagtatgtaaataaaCCACAATGAATGGATTTATAGATATAGAGTATCACTATTAATAATGgcaatacatcatagaaggcaatAACACATACGGTGGGTGGTAAAGATTGTGACCGACGGCTTCTGGCTAGGATTGTCCATGCGATGTGACAAGGACTCTGGCAGAAGTCACATCCAAATTCAATGCAAGAGCCTcacatgcatatcccacaggtctgAGCAGCATTGTTAAGTTTCCATGGGACACAATAAAAGTCCTACGGttcatgacatttggcatgttagTGTACTAAAATTATTAACTACAGaggagtaaaaaaatattattttattattttattaaattagagTTTAAGATTGCTAAatttttactttgattttaaattaaattgtcaAGCGGTACATGTTAAatgttactattttttataatttttaaaataaggtCCCTTGCTTAAAATATTCCAGTatgtaaatagtaaataaatacataaataacgATAACCGATTACAGCCTTAGGAAACATAATCGATCAAAGGTATTGCACTTACATCATATGGATAGAAatgttgggacacctgctcattcattcaaAATAATTTATCCAGAATTTGTtgtagtaactgtctctactgtccagtgaCTAATTTCTGCTAGATTCTGAATGaattctgtgaggatttgattgcactcaGCGGCAAAAAGTtttatcaccaccacccttcctTATTTCTAATTTACACTCATCCCCTCAttattccagaaaacacagtttcactgctccacagctctatTATAAGTAGAGCTCATATTATAAGGTGCAATATcaataaaagtctattttctgaactatttttatacataaggcggaCCGGATTATAAAGAAAAGCAACACCAGTATGGAACCAGGGTGTCAGCACTAGCAGGATGCAAATGTCGCTTGATAGCGTTaaactgagaaaccctgagtgttctaaGTCTAACGCTGAGTGTTCTCAGTCTAAGAgcaaatgctaatactgctgcacccagccttagtgctggagaaacttcactaaaaactcacccttaaaacacttcagcaaagtggctttactgcttttaaATACCTGACTGTAAGAAtgcatacataaggtgcactgggtTATAAGgtacactgtcgatttttgaaaaattgaaggattttaaatgcaccttattgTCAATAATTAAGcagtgtcccaacacttttgtccatgtagacTATACCCTCTCCTCACTGTGTTATTTGATCAGTCGTACTGTGCAGAGATGTTAACAGTCTTGCTAATCGATTCCCCTTAATGCAGAGTGTTGCACACGCTGGCGCACAAGCAAAGCCACGCAATAGTGATAATAGTATTAGTTCATGTGCTCTCGGCCGCCTCCCTCACTCTCCCGCCTAATATGATGCAAGTGTTCACCCAGCCTTGTTTACATGGTTATGAATAGTACACAGGAACTAGCAACTTCCTGCTTGTTTTAGTATGTAGAtcacttttttgcattttacagtttGGGTGTGGAGGCACATGCTGAACatatcttttttttgtactgataATTTTTAACAgctttgtaaattaatatttttttaaccattttttaatcttttaatcctgtttttctgcaagtaaatacAATGTGCATTGTTTATAGGATCTAAATTAATATCCACAAATAAAAGTACTGTACAGaggttttaggcacctaagcttattattaaaaatttacATTCTCTCAGTAATAAGAACGTTTCTACTGTAAAGACTAGAGACATCATGGGCTTTCCAAAGAGACCTTagttatgacaaaaaaaagtgcctttcttttttaaattgctgTCAATCACAGCTTTTTTGACATGACAATGAGAAAGACAaaagagcatttatttcttcAAAATGAGATTCAGTTTTGTACCATTTTAGAATTGTACAGTAATTTTAAATGAGGCAGAAcaaattttagtattttttacatttttgaaagtTTTTGTAAAGCAAGAAAACATGCATGATGTGCTCTGAATCTCTGGAGGAAGCGTTTTCTGATTTGTTTTCTTCATCTTCCCATATTTACAGacataaaatgaaaagaaatgttaACAAAAATCCACATGAAATTGAATAAAATACCATTACATGCCCCCTATATTCTAAAACTGAGCATGACTCAATGGCCAGTAGAATCGACATATGataaagaataaacaaacaacatttttggattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53243 lncRNA upstream 85032 879685 ~ 879896 (+) True G39529
TU53225 lncRNA upstream 197314 767338 ~ 767614 (+) True G39512
TU53223 lncRNA upstream 211091 750822 ~ 753837 (+) True G39511
TU53218 lncRNA upstream 214308 745568 ~ 750620 (+) False G39506
TU53217 lncRNA upstream 214990 745568 ~ 749938 (+) True G39506
TU53274 lncRNA downstream 76780 1044108 ~ 1045342 (+) False pdcd7
XR_002649915.1 lncRNA downstream 186216 1153544 ~ 1159078 (+) True LOC111192491
TU53349 lncRNA downstream 186288 1153616 ~ 1159066 (+) False LOC111192491
TU53366 lncRNA downstream 218244 1185572 ~ 1186479 (+) True G39616
TU53377 lncRNA downstream 241954 1209282 ~ 1209733 (+) True G39621
XM_007260221.3 mRNA upstream 1644 922757 ~ 963284 (+) True plekho2
XM_007239783.3 mRNA upstream 283306 671881 ~ 681622 (+) False immp1l
XM_007239784.2 mRNA upstream 283306 672073 ~ 681622 (+) False immp1l
XM_022669474.1 mRNA upstream 283306 675749 ~ 681622 (+) True immp1l
XM_022669472.1 mRNA upstream 327033 618157 ~ 637895 (+) True LOC103036425
XM_022669475.1 mRNA downstream 7609 974937 ~ 1000284 (+) True ankdd1a
XM_007260222.3 mRNA downstream 44311 1011639 ~ 1036934 (+) True clpx
XM_007260223.3 mRNA downstream 44311 1011639 ~ 1036934 (+) False clpx
XM_022670130.1 mRNA downstream 71245 1038573 ~ 1045347 (+) True pdcd7
XM_007260225.3 mRNA downstream 80916 1048244 ~ 1071616 (+) True ubap1l
XR_455709.3 other upstream 1644 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 673906 281585 ~ 291022 (+) False commd2
TU53369 other downstream 239459 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 252478 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 443118 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 812363 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 814154 1781482 ~ 1785093 (+) False muc2

Expression Profile