RNA id: TU53369


Basic Information

Item Value
RNA id TU53369
length 574
RNA type TUCP
GC content 0.47
exon number 4
gene id G39619
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1206787 ~ 1209096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCAGCTTTATTAAACATACAGACGGGTATCAACCTTCAGATAATCTTCAGATAAATAACCAATAAAGAACacagatatacagtaaaacactgaCGGATCAGATGAGTCCCGGCGACACCTCGATGCTGTTGATCCGCAGAACCGTCTGTGGCTGTACAATAATTCTCTTCCTCTGGAATCTGTGTCTCTTCCTGAACCTCATGTGGACCATGGGCCAGGACTCTGTCTTCTCGATGACCGTAGCCTCGACTCTGACTAAATCACAGCTGACCAGAGGCTTCCCTATGAGTGTGAAATCTTCTCCTCCAACAAGCAGCACCTTTTCCATTATAATTCGATCTCCACACTGCGCCTCAATGTGGTTCTCAATCAGGATCAAATCTTCATTAGTCACTTTCCACTGACGGCTGGCAAAGTGAACGACCGCAAACAGTCTGCCGTATTCCCCGTTCTCAATGAGGGCGTTCACCTTCTGTACAACCGCTGCACAAGACAAAGACACACAAACAATGATTAACATGTAAAAACCTACCCGCTCCCGCtctcagccctcactacaactcccataattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53366 lncRNA upstream 20308 1185572 ~ 1186479 (+) True G39616
XR_002649915.1 lncRNA upstream 47709 1153544 ~ 1159078 (+) True LOC111192491
TU53349 lncRNA upstream 47721 1153616 ~ 1159066 (+) False LOC111192491
TU53274 lncRNA upstream 161445 1044108 ~ 1045342 (+) False pdcd7
TU53256 lncRNA upstream 239459 964928 ~ 967328 (+) True G39539
TU53377 lncRNA downstream 186 1209282 ~ 1209733 (+) True G39621
TU53378 lncRNA downstream 868 1209964 ~ 1214713 (+) True G39622
TU53382 lncRNA downstream 7206 1216302 ~ 1218795 (+) True G39625
TU53388 lncRNA downstream 16427 1225523 ~ 1227051 (+) True G39629
TU53435 lncRNA downstream 56848 1265944 ~ 1268385 (+) False LOC111192492
XM_022669478.1 mRNA upstream 12041 1159772 ~ 1194746 (+) True ap2a2
XM_022669479.1 mRNA upstream 12041 1159773 ~ 1194746 (+) False ap2a2
XM_007260228.3 mRNA upstream 53499 1123343 ~ 1153288 (+) True LOC103024602
XM_007260226.2 mRNA upstream 114620 1082551 ~ 1092167 (+) True rasl12
XM_007260225.3 mRNA upstream 135171 1048244 ~ 1071616 (+) True ubap1l
XM_022669483.1 mRNA downstream 56761 1265857 ~ 1268376 (+) True LOC111192492
XM_022669482.1 mRNA downstream 57528 1266624 ~ 1268376 (+) False LOC111192492
XM_022669481.1 mRNA downstream 58769 1267865 ~ 1268376 (+) False LOC111192492
XM_007260233.3 mRNA downstream 83693 1292789 ~ 1306241 (+) True LOC103026058
XM_015608586.2 mRNA downstream 211295 1420391 ~ 1427117 (+) True polr2l
XR_455709.3 other upstream 243503 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 915765 281585 ~ 291022 (+) False commd2
TU53383 other downstream 10710 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 201350 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 570595 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 572386 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 574328 1783424 ~ 1784344 (+) False muc2

Expression Profile