RNA id: TU53377


Basic Information

Item Value
RNA id TU53377
length 286
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G39621
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1209282 ~ 1209733 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctcactacaactcccataattcacctgcacccactatcagccctcactccaactcccataattcacctgtacccactatcagccctcactccaactcccataattcacctgtacccactatcagccctcactccaactcccataattcacctgcacccactatcagccctcactccaactcccataattcacctgtacccactatcagccctcactacaactcccataattcacctgcacccactatcagccctcactacaactcccataattcacctgcaccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53366 lncRNA upstream 22803 1185572 ~ 1186479 (+) True G39616
XR_002649915.1 lncRNA upstream 50204 1153544 ~ 1159078 (+) True LOC111192491
TU53349 lncRNA upstream 50216 1153616 ~ 1159066 (+) False LOC111192491
TU53274 lncRNA upstream 163940 1044108 ~ 1045342 (+) False pdcd7
TU53256 lncRNA upstream 241954 964928 ~ 967328 (+) True G39539
TU53378 lncRNA downstream 231 1209964 ~ 1214713 (+) True G39622
TU53382 lncRNA downstream 6569 1216302 ~ 1218795 (+) True G39625
TU53388 lncRNA downstream 15790 1225523 ~ 1227051 (+) True G39629
TU53435 lncRNA downstream 56211 1265944 ~ 1268385 (+) False LOC111192492
TU53436 lncRNA downstream 56211 1265944 ~ 1268385 (+) False LOC111192492
XM_022669478.1 mRNA upstream 14536 1159772 ~ 1194746 (+) True ap2a2
XM_022669479.1 mRNA upstream 14536 1159773 ~ 1194746 (+) False ap2a2
XM_007260228.3 mRNA upstream 55994 1123343 ~ 1153288 (+) True LOC103024602
XM_007260226.2 mRNA upstream 117115 1082551 ~ 1092167 (+) True rasl12
XM_007260225.3 mRNA upstream 137666 1048244 ~ 1071616 (+) True ubap1l
XM_022669483.1 mRNA downstream 56124 1265857 ~ 1268376 (+) True LOC111192492
XM_022669482.1 mRNA downstream 56891 1266624 ~ 1268376 (+) False LOC111192492
XM_022669481.1 mRNA downstream 58132 1267865 ~ 1268376 (+) False LOC111192492
XM_007260233.3 mRNA downstream 83056 1292789 ~ 1306241 (+) True LOC103026058
XM_015608586.2 mRNA downstream 210658 1420391 ~ 1427117 (+) True polr2l
TU53369 other upstream 186 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 245998 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 918260 281585 ~ 291022 (+) False commd2
TU53383 other downstream 10073 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 200713 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 569958 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 571749 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 573691 1783424 ~ 1784344 (+) False muc2

Expression Profile