RNA id: TU53388


Basic Information

Item Value
RNA id TU53388
length 1468
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G39629
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1225523 ~ 1227051 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAGTTTCATCTCTGTATTTATTACGTACAGCTTTAAATGTGACAAGAAACAGCAAAACATCTGGAAACAATGATGTAATAtaaggcagagaaagagagagagaaagagggagagagagagaaagagaaagagagggggcaGTACAGCAGAGTTTAATACAGGAATGGaacatttggtaaaaaaaaatgtatttaattaaggAGAGGAGTTTAAATAAGTctgatttacagaaaaatatctgatgaaataaataatcaataagaATCACAGTATATTCATTTTCAGGCAGGGCAGGGGGAGGGGTTAAAGCCACAGTGATCAGCATCAACGCTTGATTTGCTGGTTGAGTTTGAGAACATGCATCAAAGTCAGCTGGGGTCAGGGTAAAGGTAAAAGGTCAGCTGGGGTCAGGGTAAAGGTAAAAGGTCAGAGATCAGAATAAACAAATTTGGTTAACAATGTGGCTGCAGTGACCATTCCCACACTGCACTATTTATAATAGTATGACCacatccttgtttctacacccattatccatcTTATCAGCTTTACTAATCATATAgaacactttacacactttattatactcctttgttcttcaatactcagggCTTCActggatagaccaccacagagcagctactaTTATTATTCGGGTGGTTGGTAGTtattcttagcactgcagtggttagcagtgattagcatggtggtggtgtatgaggtgttagtgtgtgttgttctggtacagtgagtggatcagatacagcagtgctgctgtagtttttaaacactgtgtttaaacacttactgtcctccactctattacacactcctgcctacagctgaaacaccttgtaggtaaagtaaagtcagagacagaagctctgaatctgttgctgcacagtttttacagtgttgCTCATCCTCTAGTCTTTCATCAGAGGGTACAGGACTCCGCCCACAGGACCAGGCCCACATGACTCTGCCCAGAGGACTGCAACCACAATACCCTTCCTATAGGagggtaataataaagtatgcagagaaacagatacaggactacagtctgtaattatagaactacaaagtgtcccaTATGATCATTGGCGCTGCATAAATGGATAAAAGATGTAGAAACAAGGAATgttgttattataatattatgcttGATAATTGTGTGTGAACTAACTAatcattaatacattaaaacatcttATCTCATCTTTTGCCTCTTTCACCTTTTGTACTCTCACATACCCAAAGTGGGTGTGATAGTAGTGAAATTTGAGAATGGTGTCTGTAGCCATTTAATACTGAGGTCTGGGGTTCAGGAGAGATGAAGGGACCGAATCAGTTTGATGGCTCCTTGCACAGGACGATCTCCAGCTCAGTGCGGAATAGCTTTCCTCCGTCAGACAGAGCCATGATGCTCTTCTTGGAACTGGCCAGAGTCTGTGAATCAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53382 lncRNA upstream 6728 1216302 ~ 1218795 (+) True G39625
TU53378 lncRNA upstream 10810 1209964 ~ 1214713 (+) True G39622
TU53377 lncRNA upstream 15790 1209282 ~ 1209733 (+) True G39621
TU53366 lncRNA upstream 39044 1185572 ~ 1186479 (+) True G39616
XR_002649915.1 lncRNA upstream 66445 1153544 ~ 1159078 (+) True LOC111192491
TU53435 lncRNA downstream 38893 1265944 ~ 1268385 (+) False LOC111192492
TU53436 lncRNA downstream 38893 1265944 ~ 1268385 (+) False LOC111192492
TU53437 lncRNA downstream 43540 1270591 ~ 1271228 (+) True G39661
TU53445 lncRNA downstream 52463 1279514 ~ 1280445 (+) True G39665
TU53446 lncRNA downstream 55270 1282321 ~ 1284445 (+) True G39666
XM_022669478.1 mRNA upstream 30777 1159772 ~ 1194746 (+) True ap2a2
XM_022669479.1 mRNA upstream 30777 1159773 ~ 1194746 (+) False ap2a2
XM_007260228.3 mRNA upstream 72235 1123343 ~ 1153288 (+) True LOC103024602
XM_007260226.2 mRNA upstream 133356 1082551 ~ 1092167 (+) True rasl12
XM_007260225.3 mRNA upstream 153907 1048244 ~ 1071616 (+) True ubap1l
XM_022669483.1 mRNA downstream 38806 1265857 ~ 1268376 (+) True LOC111192492
XM_022669482.1 mRNA downstream 39573 1266624 ~ 1268376 (+) False LOC111192492
XM_022669481.1 mRNA downstream 40814 1267865 ~ 1268376 (+) False LOC111192492
XM_007260233.3 mRNA downstream 65738 1292789 ~ 1306241 (+) True LOC103026058
XM_015608586.2 mRNA downstream 193340 1420391 ~ 1427117 (+) True polr2l
TU53383 other upstream 5037 1219806 ~ 1220486 (+) True G39626
TU53369 other upstream 16427 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 262239 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 934501 281585 ~ 291022 (+) False commd2
TU53498 other downstream 183395 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 552640 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 554431 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 556373 1783424 ~ 1784344 (+) False muc2
TU53708 other downstream 556373 1783424 ~ 1786521 (+) False muc2

Expression Profile