RNA id: TU53435


Basic Information

Item Value
RNA id TU53435
length 273
lncRNA type sense_over
GC content 0.50
exon number 3
gene id LOC111192492
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1265857 ~ 1268385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttccgTTATGATCAACAGGAAGCCAGGTATGCGCCGGTCGCTGTCGACGTCCAGCAGGGATGAAATTATTCGCTGGTTTAAAGAGGAGCAGACCCTCAGAGTTTGTTTACAGCAAGGCGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGTCCGTGTTAGCGAGAGGATCTTTGGATATGTTCTTTCTTACAGAACATAGTCTATGACTCCTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53388 lncRNA upstream 38893 1225523 ~ 1227051 (+) True G39629
TU53382 lncRNA upstream 47149 1216302 ~ 1218795 (+) True G39625
TU53378 lncRNA upstream 51231 1209964 ~ 1214713 (+) True G39622
TU53377 lncRNA upstream 56211 1209282 ~ 1209733 (+) True G39621
TU53366 lncRNA upstream 79465 1185572 ~ 1186479 (+) True G39616
TU53437 lncRNA downstream 2206 1270591 ~ 1271228 (+) True G39661
TU53445 lncRNA downstream 11129 1279514 ~ 1280445 (+) True G39665
TU53446 lncRNA downstream 13936 1282321 ~ 1284445 (+) True G39666
XR_002649918.1 lncRNA downstream 30586 1298971 ~ 1299827 (+) True LOC111192495
TU53458 lncRNA downstream 55496 1323881 ~ 1324207 (+) True G39673
XM_022669478.1 mRNA upstream 71198 1159772 ~ 1194746 (+) True ap2a2
XM_022669479.1 mRNA upstream 71198 1159773 ~ 1194746 (+) False ap2a2
XM_007260228.3 mRNA upstream 112656 1123343 ~ 1153288 (+) True LOC103024602
XM_007260226.2 mRNA upstream 173777 1082551 ~ 1092167 (+) True rasl12
XM_007260225.3 mRNA upstream 194328 1048244 ~ 1071616 (+) True ubap1l
XM_007260233.3 mRNA downstream 24404 1292789 ~ 1306241 (+) True LOC103026058
XM_015608586.2 mRNA downstream 152006 1420391 ~ 1427117 (+) True polr2l
XM_007260235.3 mRNA downstream 172370 1440755 ~ 1445223 (+) True sdhaf2
XM_007260240.2 mRNA downstream 432452 1700837 ~ 1705998 (+) True rplp2
XM_022670136.1 mRNA downstream 492842 1761227 ~ 1794932 (+) True muc2
TU53383 other upstream 45458 1219806 ~ 1220486 (+) True G39626
TU53369 other upstream 56848 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 302660 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 974922 281585 ~ 291022 (+) False commd2
TU53498 other downstream 142061 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 511306 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 513097 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 515039 1783424 ~ 1784344 (+) False muc2
TU53708 other downstream 515039 1783424 ~ 1786521 (+) False muc2

Expression Profile