RNA id: TU53445


Basic Information

Item Value
RNA id TU53445
length 932
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G39665
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1279514 ~ 1280445 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gccaatattcgcgcatgcgcagtcggccgcgaatattcgcgcatgcgcagtcggccgccaatattcgcgcatgcgcagacggccgccaatattcgcgcatgcgcagacggccgccaatattcgcgcatgcgcagacggccgccaatattcgcgcatgcgcagacggccgccaatattcgcgcatgcgcagacccccccccccccttttttttttttttttattcgtcttGTGGGAACACACCGCTAAAATTaggtataaattaactaaaagtgtTTTCGTAAAAAGCTAGTTGACTTTTTAACATTAGCCAGATTACCATACTTTAATTGAGTATTAATAAGATTCAGAAATTTGCTGGAAACTGGCTGTTTCAGCTCTCGGTGAAACGCGATCTTATTACTGAACTACAGCGGGttaaagctgctgctgattgagaaaaacacacccTGTGGTGGGAGAGAAGGTCGTGAATCAGCTCTTAAACGgcgctgggtgtttgttttgtttctgaacaAGCAGGTGACGCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGTAAGCTGCTGTTATGTTCTGATCTGTGCAGGCAGTTTATGCACTTAACGTAACTCCGTTAGACAACTAACTTACAGAGCTAGCGTTTGTTGTGTCTCCGGCTTAGTTTTCTGCAGTCCATGATTATTAGCTAaggtgtttagtttattttgaccCCAAACAGCAGCATTCACTGCATTTTGCATACTATTAACTAACCGCGTGAATCCGTTGCAAGTTAGCGTTAACTTCATCACAAACGAGTAACGGATTAGTAAACAcactcttgtcttttttttgaaTCCTCACAGTTTCtgtcagaaaacactgaaagaaaacttctcctctgtctctgtttatacA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53437 lncRNA upstream 8286 1270591 ~ 1271228 (+) True G39661
TU53435 lncRNA upstream 11129 1265944 ~ 1268385 (+) False LOC111192492
TU53436 lncRNA upstream 11129 1265944 ~ 1268385 (+) False LOC111192492
TU53388 lncRNA upstream 52463 1225523 ~ 1227051 (+) True G39629
TU53382 lncRNA upstream 60719 1216302 ~ 1218795 (+) True G39625
TU53446 lncRNA downstream 1876 1282321 ~ 1284445 (+) True G39666
XR_002649918.1 lncRNA downstream 18526 1298971 ~ 1299827 (+) True LOC111192495
TU53458 lncRNA downstream 43436 1323881 ~ 1324207 (+) True G39673
TU53439 lncRNA downstream 46778 1327223 ~ 1334616 (+) True G39662
TU53442 lncRNA downstream 47109 1327554 ~ 1330780 (+) False G39662
XM_022669483.1 mRNA upstream 11138 1265857 ~ 1268376 (+) True LOC111192492
XM_022669482.1 mRNA upstream 11138 1266624 ~ 1268376 (+) False LOC111192492
XM_022669481.1 mRNA upstream 11138 1267865 ~ 1268376 (+) False LOC111192492
XM_022669478.1 mRNA upstream 84768 1159772 ~ 1194746 (+) True ap2a2
XM_007260233.3 mRNA downstream 12344 1292789 ~ 1306241 (+) True LOC103026058
XM_015608586.2 mRNA downstream 139946 1420391 ~ 1427117 (+) True polr2l
XM_007260235.3 mRNA downstream 160310 1440755 ~ 1445223 (+) True sdhaf2
XM_007260240.2 mRNA downstream 420392 1700837 ~ 1705998 (+) True rplp2
XM_022670136.1 mRNA downstream 480782 1761227 ~ 1794932 (+) True muc2
TU53383 other upstream 59028 1219806 ~ 1220486 (+) True G39626
TU53369 other upstream 70418 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 316230 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 988492 281585 ~ 291022 (+) False commd2
TU53498 other downstream 130001 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 499246 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 501037 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 502979 1783424 ~ 1784344 (+) False muc2
TU53708 other downstream 502979 1783424 ~ 1786521 (+) False muc2

Expression Profile