RNA id: TU53465


Basic Information

Item Value
RNA id TU53465
length 232
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G39676
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1339823 ~ 1351454 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACTATGATACATGATACAGCCATTATTCTTGATAATGTCCCACTGGATTCTTTTTCAATGACTGAAAATAATACGGGTTTATacctaaaattaaataaatcacataATAAAGACAGTGCTGTACAAAACCACCTTGAAAAGCACAGCTGTGAGGCCTTTCCGATTTATAATATATAGAACACCtgtgtctttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53439 lncRNA upstream 5207 1327223 ~ 1334616 (+) True G39662
TU53442 lncRNA upstream 9043 1327554 ~ 1330780 (+) False G39662
TU53458 lncRNA upstream 15616 1323881 ~ 1324207 (+) True G39673
XR_002649918.1 lncRNA upstream 39996 1298971 ~ 1299827 (+) True LOC111192495
TU53446 lncRNA upstream 55378 1282321 ~ 1284445 (+) True G39666
XR_002649917.1 lncRNA downstream 58976 1410430 ~ 1413779 (+) True LOC111192494
TU53507 lncRNA downstream 68970 1420424 ~ 1427113 (+) False polr2l
TU53511 lncRNA downstream 77238 1428692 ~ 1429975 (+) True G39698
TU53524 lncRNA downstream 106784 1458238 ~ 1459551 (+) True G39704
TU53543 lncRNA downstream 237708 1589162 ~ 1589972 (+) True G39717
XM_007260233.3 mRNA upstream 33582 1292789 ~ 1306241 (+) True LOC103026058
XM_022669483.1 mRNA upstream 71447 1265857 ~ 1268376 (+) True LOC111192492
XM_022669482.1 mRNA upstream 71447 1266624 ~ 1268376 (+) False LOC111192492
XM_022669481.1 mRNA upstream 71447 1267865 ~ 1268376 (+) False LOC111192492
XM_022669479.1 mRNA upstream 145077 1159773 ~ 1194746 (+) False ap2a2
XM_015608586.2 mRNA downstream 68937 1420391 ~ 1427117 (+) True polr2l
XM_007260235.3 mRNA downstream 89301 1440755 ~ 1445223 (+) True sdhaf2
XM_007260240.2 mRNA downstream 349383 1700837 ~ 1705998 (+) True rplp2
XM_022670136.1 mRNA downstream 409773 1761227 ~ 1794932 (+) True muc2
XM_022670138.1 mRNA downstream 458148 1809602 ~ 1836384 (+) True LOC103030943
TU53383 other upstream 119337 1219806 ~ 1220486 (+) True G39626
TU53369 other upstream 130727 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 376539 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 1048801 281585 ~ 291022 (+) False commd2
TU53498 other downstream 58992 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 428237 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 430028 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 431970 1783424 ~ 1784344 (+) False muc2
TU53708 other downstream 431970 1783424 ~ 1786521 (+) False muc2

Expression Profile