RNA id: XR_002649917.1


Basic Information

Item Value
RNA id XR_002649917.1
length 757
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id LOC111192494
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1410430 ~ 1413799 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTACATCCCTCTGTTCTGTCCTCCACTCCCAGGCTGCATCCTCCATCACTCACTCCGCTTCCCTCCTTCTTCTCTGTTTCTCCTTGAGGTCGAACTCTGGGCCTGTCTGCTGATCTCCAGGCCTGCTCCTCCACCGGTCTGTCTGTAGTGTGTCAGTGCTGTGAGCTCGGCGTGTGGAGggacacagcagcagcagcagcagcagTTCTGTCTCTCAGATCTCACCAGTTGAATCCGGATAACTGAGAGGATAGGAAGTTCTTCTCCAGCAGACAGAGCTTCATATCTAACAGATCCACATGGATACTAAGGCCAAGAGCGGCTCTAAGTCAGCGTCCCGGGCAGAGAAGAAGGATCCAGCCCCTCTGAAACCGGACCCCGTCCCTGCAGAACCCTCCCCACCCACTGAACCAGAGAAAACAGCAGATGATGGAGCAGCCAGCCAGGAGGGGGCGCCGGAGGGGGGCGAGGGAAAAGGAAGTGGGTGTGAAATGCTGGAGCACCTGAAGCCCTTCCTCATCGGGGGAGCCGTTGTTGCCCTCGGGGCCATTTTGGTTGGCGCGATCTTATTGGCCAAGAAAAACTGATGATGTAGAGttattggttgattggttaacGAGTGATTGTGTCACACATTATCAGAGGGGCATAGTTTAAGTTTATGACTTCAGTTATGTATAAAGTAAtccactgaactgaactgactgAAATGTGTGCATTATTtctttatgaataaaatatatcacaTTAACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53465 lncRNA upstream 58976 1339823 ~ 1351454 (+) False G39676
TU53469 lncRNA upstream 68042 1339823 ~ 1342388 (+) True G39676
TU53474 lncRNA upstream 68042 1339823 ~ 1342388 (+) False G39676
TU53471 lncRNA upstream 69446 1339823 ~ 1340984 (+) False G39676
TU53439 lncRNA upstream 75814 1327223 ~ 1334616 (+) True G39662
TU53507 lncRNA downstream 6645 1420424 ~ 1427113 (+) False polr2l
TU53511 lncRNA downstream 14913 1428692 ~ 1429975 (+) True G39698
TU53524 lncRNA downstream 44459 1458238 ~ 1459551 (+) True G39704
TU53543 lncRNA downstream 175383 1589162 ~ 1589972 (+) True G39717
TU53544 lncRNA downstream 175383 1589162 ~ 1589972 (+) False G39717
XM_007260233.3 mRNA upstream 104189 1292789 ~ 1306241 (+) True LOC103026058
XM_022669483.1 mRNA upstream 142054 1265857 ~ 1268376 (+) True LOC111192492
XM_022669482.1 mRNA upstream 142054 1266624 ~ 1268376 (+) False LOC111192492
XM_022669481.1 mRNA upstream 142054 1267865 ~ 1268376 (+) False LOC111192492
XM_022669479.1 mRNA upstream 215684 1159773 ~ 1194746 (+) False ap2a2
XM_015608586.2 mRNA downstream 6612 1420391 ~ 1427117 (+) True polr2l
XM_007260235.3 mRNA downstream 26976 1440755 ~ 1445223 (+) True sdhaf2
XM_007260240.2 mRNA downstream 287058 1700837 ~ 1705998 (+) True rplp2
XM_022670136.1 mRNA downstream 347448 1761227 ~ 1794932 (+) True muc2
XM_022670138.1 mRNA downstream 395823 1809602 ~ 1836384 (+) True LOC103030943
TU53383 other upstream 189944 1219806 ~ 1220486 (+) True G39626
TU53369 other upstream 201334 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 447146 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 1119408 281585 ~ 291022 (+) False commd2
TU53707 other downstream 365912 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 367703 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 369645 1783424 ~ 1784344 (+) False muc2
TU53708 other downstream 369645 1783424 ~ 1786521 (+) False muc2
TU53709 other downstream 369645 1783424 ~ 1786236 (+) False muc2

Expression Profile