RNA id: TU53507


Basic Information

Item Value
RNA id TU53507
length 466
lncRNA type sense_over
GC content 0.46
exon number 3
gene id polr2l
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1420391 ~ 1427117 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCGGTGTTGTGTTTGAGTCCGGATATATTTCTGAGGAACACCGAGTGTTGAGCGTGGTGGCTAAAGTGCGGATTAACAAAGCATCTCTTCAGGATGATTATCCCAGTGCGATGCTTCACCTGCGGGAAGATTGTGGGCAACAAGTGGGAGGCTTATTTAGGTCTCCTTCAGGCAGAGTACACAGAGGGTGATGCTCTGGATGCTCTTGGACTGAAGCGGTACTGCTGCAGGAGGATGCTGTTGTCTCACGTCGATCTCATTGAGAAGTTACTGAACTACGCGCCGCTGGAGAAATAGCCCGGACTAAAACCCACAGCTTTCTTTCATCTGCTCCCccaaacccctgtatatataatgGGTCATGCTTTAGGCCCGGGGACTGTGCAGAGGACATGCTTTACATATACAGTAGATGTTCTGTTAATtgatttaagtaatgttttataaataaagtggTTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649917.1 lncRNA upstream 6645 1410430 ~ 1413779 (+) True LOC111192494
TU53465 lncRNA upstream 68970 1339823 ~ 1351454 (+) False G39676
TU53469 lncRNA upstream 78036 1339823 ~ 1342388 (+) True G39676
TU53474 lncRNA upstream 78036 1339823 ~ 1342388 (+) False G39676
TU53471 lncRNA upstream 79440 1339823 ~ 1340984 (+) False G39676
TU53511 lncRNA downstream 1579 1428692 ~ 1429975 (+) True G39698
TU53524 lncRNA downstream 31125 1458238 ~ 1459551 (+) True G39704
TU53543 lncRNA downstream 162049 1589162 ~ 1589972 (+) True G39717
TU53544 lncRNA downstream 162049 1589162 ~ 1589972 (+) False G39717
TU53545 lncRNA downstream 162049 1589162 ~ 1589613 (+) False G39717
XM_007260233.3 mRNA upstream 114183 1292789 ~ 1306241 (+) True LOC103026058
XM_022669483.1 mRNA upstream 152048 1265857 ~ 1268376 (+) True LOC111192492
XM_022669482.1 mRNA upstream 152048 1266624 ~ 1268376 (+) False LOC111192492
XM_022669481.1 mRNA upstream 152048 1267865 ~ 1268376 (+) False LOC111192492
XM_022669479.1 mRNA upstream 225678 1159773 ~ 1194746 (+) False ap2a2
XM_007260235.3 mRNA downstream 13642 1440755 ~ 1445223 (+) True sdhaf2
XM_007260240.2 mRNA downstream 273724 1700837 ~ 1705998 (+) True rplp2
XM_022670136.1 mRNA downstream 334114 1761227 ~ 1794932 (+) True muc2
XM_022670138.1 mRNA downstream 382489 1809602 ~ 1836384 (+) True LOC103030943
XM_007236235.3 mRNA downstream 438279 1865392 ~ 1871930 (+) False slc35c1
TU53498 other upstream 6625 1410446 ~ 1413799 (+) False LOC111192494
TU53383 other upstream 199938 1219806 ~ 1220486 (+) True G39626
TU53369 other upstream 211328 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 457140 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 1129402 281585 ~ 291022 (+) False commd2
TU53707 other downstream 352578 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 354369 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 356311 1783424 ~ 1784344 (+) False muc2
TU53708 other downstream 356311 1783424 ~ 1786521 (+) False muc2
TU53709 other downstream 356311 1783424 ~ 1786236 (+) False muc2

Expression Profile