Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_015608586.2 |
| length | 503 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 3 |
| gene id | polr2l |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035901.1 |
| NCBI id | CM008304.1 |
| chromosome length | 40584741 |
| location | 1420391 ~ 1427117 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0045087 | innate immune response | biological_process |
| GO:0006356 | regulation of transcription by RNA polymerase I | biological_process |
| GO:0006367 | transcription initiation from RNA polymerase II promoter | biological_process |
| GO:0006368 | transcription elongation from RNA polymerase II promoter | biological_process |
| GO:0006370 | 7-methylguanosine mRNA capping | biological_process |
| GO:0006385 | transcription elongation from RNA polymerase III promoter | biological_process |
| GO:0006386 | termination of RNA polymerase III transcription | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0050434 | positive regulation of viral transcription | biological_process |
| GO:0032481 | positive regulation of type I interferon production | biological_process |
| GO:0006283 | transcription-coupled nucleotide-excision repair | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005665 | RNA polymerase II, core complex | cellular_component |
| GO:0005666 | RNA polymerase III complex | cellular_component |
| GO:0005736 | RNA polymerase I complex | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0001054 | RNA polymerase I activity | molecular_function |
| GO:0001055 | RNA polymerase II activity | molecular_function |
| GO:0001056 | RNA polymerase III activity | molecular_function |
| id | description |
|---|---|
| K03007 | RPB10, POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_002649917.1 | lncRNA | upstream | 6612 | 1410430 ~ 1413779 (+) | True | LOC111192494 |
| TU53465 | lncRNA | upstream | 68937 | 1339823 ~ 1351454 (+) | False | G39676 |
| TU53469 | lncRNA | upstream | 78003 | 1339823 ~ 1342388 (+) | True | G39676 |
| TU53474 | lncRNA | upstream | 78003 | 1339823 ~ 1342388 (+) | False | G39676 |
| TU53471 | lncRNA | upstream | 79407 | 1339823 ~ 1340984 (+) | False | G39676 |
| TU53511 | lncRNA | downstream | 1575 | 1428692 ~ 1429975 (+) | True | G39698 |
| TU53524 | lncRNA | downstream | 31121 | 1458238 ~ 1459551 (+) | True | G39704 |
| TU53543 | lncRNA | downstream | 162045 | 1589162 ~ 1589972 (+) | True | G39717 |
| TU53544 | lncRNA | downstream | 162045 | 1589162 ~ 1589972 (+) | False | G39717 |
| TU53545 | lncRNA | downstream | 162045 | 1589162 ~ 1589613 (+) | False | G39717 |
| XM_007260233.3 | mRNA | upstream | 114150 | 1292789 ~ 1306241 (+) | True | LOC103026058 |
| XM_022669483.1 | mRNA | upstream | 152015 | 1265857 ~ 1268376 (+) | True | LOC111192492 |
| XM_022669482.1 | mRNA | upstream | 152015 | 1266624 ~ 1268376 (+) | False | LOC111192492 |
| XM_022669481.1 | mRNA | upstream | 152015 | 1267865 ~ 1268376 (+) | False | LOC111192492 |
| XM_022669478.1 | mRNA | upstream | 225645 | 1159772 ~ 1194746 (+) | True | ap2a2 |
| XM_007260235.3 | mRNA | downstream | 13638 | 1440755 ~ 1445223 (+) | True | sdhaf2 |
| XM_007260240.2 | mRNA | downstream | 273720 | 1700837 ~ 1705998 (+) | True | rplp2 |
| XM_022670136.1 | mRNA | downstream | 334110 | 1761227 ~ 1794932 (+) | True | muc2 |
| XM_022670138.1 | mRNA | downstream | 382485 | 1809602 ~ 1836384 (+) | True | LOC103030943 |
| XM_007236235.3 | mRNA | downstream | 438275 | 1865392 ~ 1871930 (+) | False | slc35c1 |
| TU53498 | other | upstream | 6592 | 1410446 ~ 1413799 (+) | False | LOC111192494 |
| TU53383 | other | upstream | 199905 | 1219806 ~ 1220486 (+) | True | G39626 |
| TU53369 | other | upstream | 211295 | 1206787 ~ 1209096 (+) | True | G39619 |
| XR_455709.3 | other | upstream | 457107 | 922757 ~ 963284 (+) | False | plekho2 |
| XR_002649913.1 | other | upstream | 1129369 | 281585 ~ 291022 (+) | False | commd2 |
| TU53707 | other | downstream | 352574 | 1779691 ~ 1782660 (+) | False | muc2 |
| TU53710 | other | downstream | 354365 | 1781482 ~ 1785093 (+) | False | muc2 |
| TU53705 | other | downstream | 356307 | 1783424 ~ 1784344 (+) | False | muc2 |
| TU53708 | other | downstream | 356307 | 1783424 ~ 1786521 (+) | False | muc2 |
| TU53709 | other | downstream | 356307 | 1783424 ~ 1786236 (+) | False | muc2 |
