RNA id: TU53524


Basic Information

Item Value
RNA id TU53524
length 591
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G39704
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1458238 ~ 1459551 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGGTTTCTTCtttttatatacacatttatatctatatacacTGTACAGTTATGCCAAAATAAATCATCAACATGTCAAATTATATTGTGCACATCACATACTGCAGGTGTGGTACGGGGGACCTAGAGAACAGGATGGGCTTCATCATCAGAACAACActtcatttaaaacacacacatacacacacacacacacacacacatacaagtatatataaaaagtgGGAAACTTGGCCTTCACAATTTCTGCCAATATATATCCCCCCTAAACCTCTCTTCACCTTTTCTGACTTttagaccacacacacacactgacccacacactcatccacacacaaacacacacacacacacacacacacacacactcatccacaAACACAAcgacccacacaaacacacacactgacccccACAGAccgaccacacacacacactgacccacacacaaacacacactcttccatgcacacactcacccacacacatcGGCCCACACATTCACTTATCcacacactcatccacacacaaacCGACTCCCACACACGccgacccacacacacactcatccacacacactgacccacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53511 lncRNA upstream 28263 1428692 ~ 1429975 (+) True G39698
TU53507 lncRNA upstream 31125 1420424 ~ 1427113 (+) False polr2l
XR_002649917.1 lncRNA upstream 44459 1410430 ~ 1413779 (+) True LOC111192494
TU53469 lncRNA upstream 115850 1339823 ~ 1342388 (+) True G39676
TU53543 lncRNA downstream 129611 1589162 ~ 1589972 (+) True G39717
TU53544 lncRNA downstream 129611 1589162 ~ 1589972 (+) False G39717
TU53545 lncRNA downstream 129611 1589162 ~ 1589613 (+) False G39717
TU53546 lncRNA downstream 136869 1596420 ~ 1684465 (+) True G39718
TU53552 lncRNA downstream 193896 1653447 ~ 1653820 (+) True G39724
XM_007260235.3 mRNA upstream 13015 1440755 ~ 1445223 (+) True sdhaf2
XM_015608586.2 mRNA upstream 31121 1420391 ~ 1427117 (+) True polr2l
XM_007260233.3 mRNA upstream 151997 1292789 ~ 1306241 (+) True LOC103026058
XM_022669483.1 mRNA upstream 189862 1265857 ~ 1268376 (+) True LOC111192492
XM_007260240.2 mRNA downstream 241286 1700837 ~ 1705998 (+) True rplp2
XM_022670136.1 mRNA downstream 301676 1761227 ~ 1794932 (+) True muc2
XM_022670138.1 mRNA downstream 350051 1809602 ~ 1836384 (+) True LOC103030943
XM_007236235.3 mRNA downstream 405841 1865392 ~ 1871930 (+) False slc35c1
XM_007236234.3 mRNA downstream 406865 1866416 ~ 1871930 (+) True slc35c1
TU53498 other upstream 44439 1410446 ~ 1413799 (+) False LOC111192494
TU53383 other upstream 237752 1219806 ~ 1220486 (+) True G39626
TU53369 other upstream 249142 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 494954 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 1167216 281585 ~ 291022 (+) False commd2
TU53707 other downstream 320140 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 321931 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 323873 1783424 ~ 1784344 (+) False muc2
TU53708 other downstream 323873 1783424 ~ 1786521 (+) False muc2
TU53709 other downstream 323873 1783424 ~ 1786236 (+) False muc2

Expression Profile