RNA id: TU53544


Basic Information

Item Value
RNA id TU53544
length 248
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G39717
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1589162 ~ 1589972 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

catccatcagttatcaaaccccagaacctactaatctaaccaacacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccacctgttatcaaaccccagaacctactaatctaaccagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53524 lncRNA upstream 129611 1458238 ~ 1459551 (+) True G39704
TU53511 lncRNA upstream 159187 1428692 ~ 1429975 (+) True G39698
TU53507 lncRNA upstream 162049 1420424 ~ 1427113 (+) False polr2l
XR_002649917.1 lncRNA upstream 175383 1410430 ~ 1413779 (+) True LOC111192494
TU53474 lncRNA upstream 246774 1339823 ~ 1342388 (+) False G39676
TU53546 lncRNA downstream 6448 1596420 ~ 1684465 (+) True G39718
TU53552 lncRNA downstream 63475 1653447 ~ 1653820 (+) True G39724
TU53682 lncRNA downstream 129897 1719869 ~ 1721930 (+) True G39816
XR_002649916.1 lncRNA downstream 137192 1727164 ~ 1727655 (+) True LOC111192493
XR_002649919.1 lncRNA downstream 213695 1803667 ~ 1806941 (+) True LOC111192496
XM_007260235.3 mRNA upstream 143939 1440755 ~ 1445223 (+) True sdhaf2
XM_015608586.2 mRNA upstream 162045 1420391 ~ 1427117 (+) True polr2l
XM_007260233.3 mRNA upstream 282921 1292789 ~ 1306241 (+) True LOC103026058
XM_022669482.1 mRNA upstream 320786 1266624 ~ 1268376 (+) False LOC111192492
XM_007260240.2 mRNA downstream 110865 1700837 ~ 1705998 (+) True rplp2
XM_022670136.1 mRNA downstream 171255 1761227 ~ 1794932 (+) True muc2
XM_022670138.1 mRNA downstream 219630 1809602 ~ 1836384 (+) True LOC103030943
XM_007236235.3 mRNA downstream 275420 1865392 ~ 1871930 (+) False slc35c1
XM_007236234.3 mRNA downstream 276444 1866416 ~ 1871930 (+) True slc35c1
TU53498 other upstream 175363 1410446 ~ 1413799 (+) False LOC111192494
TU53383 other upstream 368676 1219806 ~ 1220486 (+) True G39626
TU53369 other upstream 380066 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 625878 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 1298140 281585 ~ 291022 (+) False commd2
TU53707 other downstream 189719 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 191510 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 193452 1783424 ~ 1784344 (+) False muc2
TU53708 other downstream 193452 1783424 ~ 1786521 (+) False muc2
TU53709 other downstream 193452 1783424 ~ 1786236 (+) False muc2