RNA id: TU53546


Basic Information

Item Value
RNA id TU53546
length 346
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G39718
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1596420 ~ 1684465 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctgcacccactatcagccttcactacaactcccataattcacctgcacccactatcagaccctcactacaactcccataattcacctgcacccactatcagaccctcactacaactcccataattcacctgcacccactatcagacctcactccaactcccataattcacctgcacccactatcagacctcactccaactcccataattcacctgcacccactatcagacctcactccaactcccataattcacctgcacccactatcagaccctcactacaactcccataattcacctgcacccactatcagaccctcactacaactcccataattcacctgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53543 lncRNA upstream 6448 1589162 ~ 1589972 (+) True G39717
TU53544 lncRNA upstream 6448 1589162 ~ 1589972 (+) False G39717
TU53545 lncRNA upstream 6807 1589162 ~ 1589613 (+) False G39717
TU53524 lncRNA upstream 136869 1458238 ~ 1459551 (+) True G39704
TU53511 lncRNA upstream 166445 1428692 ~ 1429975 (+) True G39698
TU53682 lncRNA downstream 35404 1719869 ~ 1721930 (+) True G39816
XR_002649916.1 lncRNA downstream 42699 1727164 ~ 1727655 (+) True LOC111192493
XR_002649919.1 lncRNA downstream 119202 1803667 ~ 1806941 (+) True LOC111192496
TU53702 lncRNA downstream 155038 1839503 ~ 1841649 (+) True G39825
TU53740 lncRNA downstream 172871 1857336 ~ 1891140 (+) True G39838
XM_007260235.3 mRNA upstream 151197 1440755 ~ 1445223 (+) True sdhaf2
XM_015608586.2 mRNA upstream 169303 1420391 ~ 1427117 (+) True polr2l
XM_007260233.3 mRNA upstream 290179 1292789 ~ 1306241 (+) True LOC103026058
XM_022669482.1 mRNA upstream 328044 1266624 ~ 1268376 (+) False LOC111192492
XM_007260240.2 mRNA downstream 16372 1700837 ~ 1705998 (+) True rplp2
XM_022670136.1 mRNA downstream 76762 1761227 ~ 1794932 (+) True muc2
XM_022670138.1 mRNA downstream 125137 1809602 ~ 1836384 (+) True LOC103030943
XM_007236235.3 mRNA downstream 180927 1865392 ~ 1871930 (+) False slc35c1
XM_007236234.3 mRNA downstream 181951 1866416 ~ 1871930 (+) True slc35c1
TU53498 other upstream 182621 1410446 ~ 1413799 (+) False LOC111192494
TU53383 other upstream 375934 1219806 ~ 1220486 (+) True G39626
TU53369 other upstream 387324 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 633136 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 1305398 281585 ~ 291022 (+) False commd2
TU53707 other downstream 95226 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 97017 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 98959 1783424 ~ 1784344 (+) False muc2
TU53708 other downstream 98959 1783424 ~ 1786521 (+) False muc2
TU53709 other downstream 98959 1783424 ~ 1786236 (+) False muc2

Expression Profile