RNA id: TU53702


Basic Information

Item Value
RNA id TU53702
length 2125
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G39825
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1839503 ~ 1841649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAATCACAATGGATTTTTacttgtgttttattgtgtgcATTTTTATAACAAATATACTGTTACTGCCCAGATACACAGCTTTACAGATTATTTTCTCAGATAGACTTGCTCAGTACTAAACACATGTGTaagagaaataagaaatatGAAAAGATCATCTTTGCACTCATCCTTGCAGACCTCCAACATGGCCTAAAAAGCCACCGTCACTttgggaaagaaaaagaataagaaccTGCTCTGAGGAAAACCGAAGAGCGAATCACACTTTGAAGGTTTTTACATGCATCCAAGGGATATATGGCAACATCCAGGAGATCAAAAGCATCAATAAACATAATCACTTAGGAACAGTGCAGACCTCTCCATTtatattcatttcatttatattaaaagCAAAGAATTTGCAAGACAGACCAGTTATATAAGTAAAACCTTTGGCATTCTGCGACAGACCAATTTCACATTTGCAAACACAAATGAAGAGGACCTGCGGTTGGTGAACGTCTGGGACAGTCGGGTGGACAGTGTTCACTCATCAGAGAACCTGTTGGTCAGAAAACTGGGAATGGAGGACTGAAGAGTGAAAGTGCTGTTTTATTAAGGTTTATAAGCTGGAATTATCAGTTAGCAAAATTCTCTTAAGACTAAACTCAAGGTAGCAATGAAATAACAGAGGCTTCCCAGCCTTCCATTCTTATAGCTGCTCTGTAAACCTTCTGAATCAGCACAACAGCTTGtttttgtcactgtccaaaaCATTACATGCATCTGTAAAACGGTACCATAGAACAAAAACGTACTTATTTGTTACTGGCAGTCAGTGCAAAAAGATCTGATTTCAGCTGTTTCTGAAGCAtgtctattggtccattcattgtgAAACATTCACGAAGGACTGCTTCTGTGTTTAAATGatgtgaaacaaaacaaaataaataaataaatgctattggacagtgacaatatgcaGCAATTTAATTACAATCTGGTATTTGTTCATATTGTACAAACTGTACTTCAGCAACACTGAACTACTGAAACTCGTGGGCGAAAGGTTTGTAGGATTTCAAGCAAGGCACTATGACTCCTCTCAATAGAAGTGTACTAAACTGAGGTCAGACATGACTGGGGCGGACACTGCGGCTTGTTTACAAATGTGAAATCAGTGTATTTCTTACACGTGTCACACTTAATTACAGATAATCATTAAGACTTCAGTGGGTCGAGCGACAAAGCGGAGAACGAGCCATACAAAAATCATAACGGCTGATAGAAATTCAACATTTAACCAGTAAATCATTGAATGCGTCGGTTTACATTTGCAAATCTGGCGTAACCCACGATATTAGACCCTCGGTAAGATCTGACATACTTTAATATCTCTTTAATTGTTCTCAAAATAATTTACAatccattaaatatatatagagctATATTTATACAGATAAGAGCATATAGATCAACCACACACAGAGACTCACAGGAATACGCATATACAGATCAGACTGGACGGGGTGGAGGGGAATCTCGGTGGAATCGTGGCTACAGCTGCACTCCGACTCGGCCTGAATACACACTCGCTCACAAGTGGCAACAAAATGCGTGtgccgtatatatatatatataatttttttttctcccataaAGAGCATCCAATCACGCAGGAGAACACACACCTAGCCTGAGCCTGTTCCTGCAGGGGACAGGGAGGCATTTCTCAACATTTCTTTTGATTTTCGCAGACAATAAAAAAGCACAGGTGTCGTATGGAATAACCCGGAGGGCTGTCGGGCCTGAGTGAGTGTATTTACAGGACGACGGTGGAGCGCAGGGCGGAGTTACAGCTCCTCCGCCATCTGCAGCAGGGAGTTAATAGCAGCGTCCTTGTTGCCCTGCTGGGCCTCCAACACCGTGCGGATCACTTCTTTATCCAGGTTGGGGAACATGTCCTGAAGAGCCTTCAGGTCCTCCTCGCTGCAGGGGGCGCCGCGAGGTGCGGCTGCAGGCACTGCCGGCATCCCCATCGGTACCACACCCTGGTTATACACACCCGGGACTCCTGGAACAGCAGAACAAGGTTCAGCCAAAAATTTCATTATCACGCGTCCGAACAACTAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649919.1 lncRNA upstream 32562 1803667 ~ 1806941 (+) True LOC111192496
XR_002649916.1 lncRNA upstream 111848 1727164 ~ 1727655 (+) True LOC111192493
TU53682 lncRNA upstream 117573 1719869 ~ 1721930 (+) True G39816
TU53546 lncRNA upstream 155038 1596420 ~ 1684465 (+) True G39718
TU53552 lncRNA upstream 185683 1653447 ~ 1653820 (+) True G39724
TU53740 lncRNA downstream 15687 1857336 ~ 1891140 (+) True G39838
TU53704 lncRNA downstream 69317 1910966 ~ 1952906 (+) True G39826
TU53749 lncRNA downstream 87301 1928950 ~ 1970208 (+) True G39846
TU53750 lncRNA downstream 89544 1931193 ~ 1932060 (+) True G39847
TU53751 lncRNA downstream 90497 1932146 ~ 1932812 (+) True G39848
XM_022670138.1 mRNA upstream 3119 1809602 ~ 1836384 (+) True LOC103030943
XM_022670136.1 mRNA upstream 44571 1761227 ~ 1794932 (+) True muc2
XM_007260240.2 mRNA upstream 133505 1700837 ~ 1705998 (+) True rplp2
XM_007260235.3 mRNA upstream 394280 1440755 ~ 1445223 (+) True sdhaf2
XM_015608586.2 mRNA upstream 412386 1420391 ~ 1427117 (+) True polr2l
XM_007236235.3 mRNA downstream 23743 1865392 ~ 1871930 (+) False slc35c1
XM_007236234.3 mRNA downstream 24767 1866416 ~ 1871930 (+) True slc35c1
XM_022669489.1 mRNA downstream 41154 1882803 ~ 1948422 (+) False mapk8ip1
XM_007236233.3 mRNA downstream 57279 1898928 ~ 1948422 (+) True mapk8ip1
XM_022669490.1 mRNA downstream 276994 2118643 ~ 2235758 (+) True LOC111192498
TU53708 other upstream 52982 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 53267 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 54410 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 55159 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 56843 1779691 ~ 1782660 (+) False muc2
TU53987 other downstream 848318 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 893947 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 2292861 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 3466897 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4691716 6533365 ~ 6533674 (+) True G40756

Expression Profile