RNA id: TU53710


Basic Information

Item Value
RNA id TU53710
length 1802
RNA type TUCP
GC content 0.45
exon number 5
gene id muc2
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1761227 ~ 1794932 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTCCAACAACAACTCCAACCACAACCTTACCTCCAACTTGCGAACCTTGCCACTGGTCAGATTGGATGGACTTTGGTCCTCCTACAACAGGTGCCAATGGTGGTGAAATTGTGCCAATAAAAAGAATAACTGACACTTATCCAGTGTCTGTGGCAAACCCAGTGAAGTGCAATGCAGAGCGAAACTCTACCCTGGACTTCCACTTGCAGATTTGGGCCAAGAAGTGACCTGTAATGCCCAGGATGGACTGATTTGTTTGAACCAAAACCAGGGTCTCCAGGAGCAATGCTTTGATTATGAGATTAGAGTGTACTGTTGTGACAGATCAGAACATTGTACAACAACTCCAACCACAACCTTACCTCCAACTTGCGAACCTTGCCACTGGTCAGATTGGATGGACTTTGGTCCTCCTACAACAGGTGCCAATGGTGGTGAAATTGTGCCAATAAAAAGAATAACTGACACTTATCCAGTGTCTGTGGCAAACCCAGTGAAGTGCAATGCAGAGCGAAACTCTACCCTGGACTTCCACTTGCAGATTTGGGCCAAGAAGTGACCTGTAATGCCCAGAATGGACTGATTTGTTTGAACCAAAACCAGGGTCTCCAGGAGCAATGCTTTGATTATGAGATTAGAGTGTACTGTTGTGACAGATCAGAAGGTTGTacaacaactccaacaacaactccaacaacaactccaactacaacaacaacaactacaacAACAACCACTCCAACAACAACTACCACCACTCCAACAACAACTCCAACCACAACCTTACCTCCAACTTGTGAACCTTGCCACTGGTCAGATTGGATGGACTTTGGTCCTCCTACAACAGGTGCCAATGGTGGTGAAATTGTGCCAATAAAAAGAATAACTGACACTTATCCCAGTGTCTGTGGCAAACCCAGTGAAGTGCAATGCAGAGCGAAACTCTACCCTGGACTTCCACTGTCAGATGTAGGCCAAGGGTGGTGAAATTGTGCCAATAAAAAGAATAACTGACACTTATCCCAGTGTCTGTGGCAAACCCAGTGAAGTGCAATGCAGAGCAAAACTCTACCCTGGAATTCCACTTGCAGATTTGGGCCAAGAAGTGACCTGTAATGCCCAGAATGGACTGATTTGTTTGAACCAAAACCAGGGTCTTGAGGAGCAATGCTTTGATTATGAGATTAGAGTGTACTGTTGTGACAGATCAGAACATTGTacaacaactccaACAACAACTCCAACAACCACAACAACAACTCAAACCACAACCTTACCTCCAACAACCACTCCAACAACAACTCCAACTACAACTTCAACAACCACAACTACATCTACAACAATGACCACTCCTACAACCACAACAACAACTCCAACCACAACCTTACCTCCAACTTGTGAACCTTGCCACTGGTCAGATTGGATGGACTTTGGTCCTCCTACAACAGGTGCCAATGGTGGTGAAATTGTGCCAATAAAAAGAATAACTGACACTTATCCCAGTGTCTGTGGCAAACCCAGTGAAGTGCAATGCAGAGCGAAACTCTACCCTGGACTTCCACTGTCAGATGTAGGCCAAGAAGTGACCTGTAATGCCCAGGATGGACTGATTTGTTTGAACCAAAACCAGGGTCTCCAGGAGCAATGCTTTGATTATGAGATTAGAGTGTACTGTTGTGACAGATCAGAACATTGTacaacaactccaacaacaactccaacaaccactccaacaacaactccaacaacaACTCCAACTACAACTTcaacaacaactccaacaacaactccaacaacaACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649916.1 lncRNA upstream 53827 1727164 ~ 1727655 (+) True LOC111192493
TU53682 lncRNA upstream 59552 1719869 ~ 1721930 (+) True G39816
TU53546 lncRNA upstream 97017 1596420 ~ 1684465 (+) True G39718
TU53552 lncRNA upstream 127662 1653447 ~ 1653820 (+) True G39724
TU53545 lncRNA upstream 191869 1589162 ~ 1589613 (+) False G39717
XR_002649919.1 lncRNA downstream 18574 1803667 ~ 1806941 (+) True LOC111192496
TU53702 lncRNA downstream 54410 1839503 ~ 1841649 (+) True G39825
TU53740 lncRNA downstream 72243 1857336 ~ 1891140 (+) True G39838
TU53704 lncRNA downstream 125873 1910966 ~ 1952906 (+) True G39826
TU53749 lncRNA downstream 143857 1928950 ~ 1970208 (+) True G39846
XM_007260240.2 mRNA upstream 75484 1700837 ~ 1705998 (+) True rplp2
XM_007260235.3 mRNA upstream 336259 1440755 ~ 1445223 (+) True sdhaf2
XM_015608586.2 mRNA upstream 354365 1420391 ~ 1427117 (+) True polr2l
XM_007260233.3 mRNA upstream 475241 1292789 ~ 1306241 (+) True LOC103026058
XM_022669481.1 mRNA upstream 513106 1267865 ~ 1268376 (+) False LOC111192492
XM_022670138.1 mRNA downstream 24509 1809602 ~ 1836384 (+) True LOC103030943
XM_007236235.3 mRNA downstream 80299 1865392 ~ 1871930 (+) False slc35c1
XM_007236234.3 mRNA downstream 81323 1866416 ~ 1871930 (+) True slc35c1
XM_022669489.1 mRNA downstream 97710 1882803 ~ 1948422 (+) False mapk8ip1
XM_007236233.3 mRNA downstream 113835 1898928 ~ 1948422 (+) True mapk8ip1
TU53498 other upstream 367683 1410446 ~ 1413799 (+) False LOC111192494
TU53383 other upstream 560996 1219806 ~ 1220486 (+) True G39626
TU53369 other upstream 572386 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 818198 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 1490460 281585 ~ 291022 (+) False commd2
TU53987 other downstream 904874 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 950503 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 2349417 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 3523453 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4748272 6533365 ~ 6533674 (+) True G40756

Expression Profile